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2XWM

Crystal structure of IspD from Mycobacterium smegmatis in complex with CMP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-2
Synchrotron siteESRF
BeamlineID14-2
Temperature [K]110
Detector technologyCCD
Collection date2010-02-10
DetectorADSC QUANTUM 4r
Spacegroup nameP 21 21 21
Unit cell lengths45.590, 71.700, 111.890
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution60.370 - 1.800
R-factor0.18185
Rwork0.180
R-free0.21529
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.254
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.6.0060)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.0001.900
High resolution limit [Å]1.8001.800
Rmerge0.0900.560
Number of reflections34794
<I/σ(I)>16.23.5
Completeness [%]99.999.9
Redundancy77
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293SITTING-DROP VAPOR-DIFFUSION METHOD AT 293 K. DROPS WITH 300 NANOLITERS PROTEIN SOLUTION (PROTEIN AT 40 MG/ML IN 20 MM BIS-TRIS-PROPANE, PH 6.5, 0.1 M NACL WITH 10 MM CMP, 10 MM MGCL2 AND 10 MM ERYTHRITOL) AND 300 NANOLITERS SCREENING/RESERVOIR SOLUTION (10% (W/V) PEG 20,000, 20% (V/V) MONOMETHYL ETHER PEG 550, 0.03M NAF, 0.03M NAI, 0.03M NABR, AND 0.1M MOPS/NA-HEPES, PH 7.5)

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PDB entries from 2024-08-28

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