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2XS4

Structure of karilysin catalytic MMP domain in complex with magnesium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameI 4
Unit cell lengths85.790, 85.790, 53.480
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.700
R-factor0.15878
Rwork0.158
R-free0.18575
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xs3
RMSD bond length0.006
RMSD bond angle1.034
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.3001.790
High resolution limit [Å]1.7001.700
Rmerge0.0300.120
Number of reflections21225
<I/σ(I)>37.110.8
Completeness [%]99.095.9
Redundancy7.24.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1277CRYSTALS OF MAGNESIUM-BOUND KLY18 WERE OBTAINED AT 4C BY MIXING PROTEIN SOLUTION PREINCUBATED WITH CALCIUM (AT 7.3MG ML-1 IN 5MM TRIS-HCL, PH8.0, 5MM CALCIUM CHLORIDE, 0.02% SODIUM AZIDE) AND 14% SODIUM POLYACRYLATE 5100, 20MM MAGNESIUM CHLORIDE, 0.1M HEPES, PH7.5 IN A VOLUME RATIO OF 1:3. THE LATTER CONDITIONS WERE SCALED UP TO THE MICROLITER RANGE WITH 24-WELL CRYSCHEM CRYSTALLIZATION DISHES (HAMPTON RESEARCH).

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PDB entries from 2025-06-18

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