2XS4
Structure of karilysin catalytic MMP domain in complex with magnesium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC CCD |
Spacegroup name | I 4 |
Unit cell lengths | 85.790, 85.790, 53.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.700 |
R-factor | 0.15878 |
Rwork | 0.158 |
R-free | 0.18575 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xs3 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.034 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.300 | 1.790 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.030 | 0.120 |
Number of reflections | 21225 | |
<I/σ(I)> | 37.1 | 10.8 |
Completeness [%] | 99.0 | 95.9 |
Redundancy | 7.2 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 277 | CRYSTALS OF MAGNESIUM-BOUND KLY18 WERE OBTAINED AT 4C BY MIXING PROTEIN SOLUTION PREINCUBATED WITH CALCIUM (AT 7.3MG ML-1 IN 5MM TRIS-HCL, PH8.0, 5MM CALCIUM CHLORIDE, 0.02% SODIUM AZIDE) AND 14% SODIUM POLYACRYLATE 5100, 20MM MAGNESIUM CHLORIDE, 0.1M HEPES, PH7.5 IN A VOLUME RATIO OF 1:3. THE LATTER CONDITIONS WERE SCALED UP TO THE MICROLITER RANGE WITH 24-WELL CRYSCHEM CRYSTALLIZATION DISHES (HAMPTON RESEARCH). |