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2XB8

Structure of Mycobacterium tuberculosis type II dehydroquinase in complex with inhibitor compound (2R)-2-(4-methoxybenzyl)-3- dehydroquinic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyCCD
Collection date2010-02-14
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameF 2 3
Unit cell lengths126.520, 126.520, 126.520
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.400
R-factor0.1602
Rwork0.156
R-free0.20594
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h0s
RMSD bond length0.016
RMSD bond angle1.554
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0072)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.0002.530
High resolution limit [Å]2.4002.400
Rmerge0.1200.380
Number of reflections6707
<I/σ(I)>62
Completeness [%]100.0100
Redundancy10.911
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17.520 MG/ML DEHYDROQUINASE, 0.05 M TRIS-HCL PH 7.5, 1 MM EDTA, 0.2 M SODIUM CHLORIDE, 12.5 MM (2R)-2-PARA-METHOXYBENZYL-3-DEHYDROQUINIC ACID, 5% (V/V) METHANOL, 32% (V/V) 2-METHYL-2,4-PENTANEDIOL, 0.3 M AMMONIUM SULPHATE, 0.1 M HEPES-NAOH PH 7.5

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PDB entries from 2024-07-17

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