Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2X5J

Crystal structure of the Apoform of the D-Erythrose-4-phosphate dehydrogenase from E. coli

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameP 21 21 21
Unit cell lengths86.300, 110.700, 138.000
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.500 - 2.300
R-factor0.20921
Rwork0.206
R-free0.26636
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gd1
RMSD bond length0.013
RMSD bond angle1.468
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0072)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.5002.420
High resolution limit [Å]2.3002.300
Rmerge0.0600.430
Number of reflections59159
<I/σ(I)>24.45.6
Completeness [%]99.699.8
Redundancy5.65.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
110 % (W/V) PEG 8000, 100 MM NA/K PHOSPHATE BUFFER PH 6.2, 200 MM NACL

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon