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2X0N

Structure of glycosomal glyceraldehyde-3-phosphate dehydrogenase from Trypanosoma brucei determined from Laue data

Replaces:  1GGA
Experimental procedure
Experimental methodLAUE
Source typeSYNCHROTRON
Source detailsSRS BEAMLINE PX9.7
Synchrotron siteSRS
BeamlinePX9.7
Temperature [K]273
Detector technologyFILM
DetectorCEA
Wavelength(s)0.489-1.905
Spacegroup nameP 21 21 2
Unit cell lengths135.520, 256.270, 114.910
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution7.399 - 3.200
R-factor0.1533
Rwork0.150
R-free0.21820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1gd1
RMSD bond length0.009
RMSD bond angle1.492
Data reduction softwareDARESBURY (LAUE PROCESSING SOFTWARE)
Data scaling softwareDARESBURY (LAUE PROCESSING SOFTWARE)
Phasing softwareMERLOT
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 Overall
Low resolution limit [Å]7.400
High resolution limit [Å]3.200
Rmerge0.150
Number of reflections34991
<I/σ(I)>7.2
Completeness [%]57.0
Redundancy2.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
16.5PROTEIN: 5 MICROL OF 6 MG/ML GGAPDH IN 25 MM TRIS HCL PH 7.8, 0.6M AMMONIUM SULPHATE, 2MM NAD, 1MM DITHIOTHREITOL 1MM NA AZIDE, 1 MM EDTA. PRECIPITANT: 5 MICROL OF 52% SATURATED AMMONIUM SULPHATE, 0.2M N,N-BIS-(2-HYDROXYETHYL)-2-AMINOETHANE SULFONIC ACID PH 6.5, 1MM DITHIOTHREITOL, 1MM NA AZIDE, 1MM EDTA, 20MM 3-PHOSPHOGLYCERATE. RESERVOIR: 1 ML

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PDB entries from 2025-07-02

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