Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VDL

Re-refinement of Integrin AlphaIIbBeta3 Headpiece

Replaces:  1TXV
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2003-08-05
DetectorCUSTOM (SBC2 3K)
Spacegroup nameP 32 2 1
Unit cell lengths148.927, 148.927, 176.398
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.990 - 2.750
R-factor0.146
Rwork0.144
R-free0.19100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jv2
RMSD bond length0.006
RMSD bond angle0.997
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC (5.3.0037)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.850
High resolution limit [Å]2.7502.750
Rmerge0.1400.600
Number of reflections62512
<I/σ(I)>12.13
Completeness [%]99.9100
Redundancy7.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.527711% PEG 3350, 0.7 M MAGNESIUM ACETATE, 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon