2QBY
Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus)
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.3.1 |
| Synchrotron site | ALS |
| Beamline | 8.3.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2006-04-20 |
| Detector | ADSC QUANTUM 210 |
| Wavelength(s) | 1.11111, 0.979578, 0.979733, 0.987379 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 77.649, 199.143, 213.405 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 30.000 - 3.350 |
| R-factor | 0.2262 |
| Rwork | 0.226 |
| R-free | 0.26920 |
| Structure solution method | MAD |
| Starting model (for MR) | 1fnn |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.837 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | MLPHARE |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 3.470 |
| High resolution limit [Å] | 3.350 | 3.350 |
| Rmerge | 0.835 | |
| Number of reflections | 24287 | |
| <I/σ(I)> | 25.4 | 1.93 |
| Completeness [%] | 98.7 | 99 |
| Redundancy | 6.9 | 5.6 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | MICROBATCH | 5 | 292 | 25mM HEPES pH 7.5, 50mM sodium chloride, 5% glycerol, 0.5mM TCEP, 15mM spermidine, 15mM sodium cacodylate pH 5.0, 4.4% (w/v) PEG 3350 and 25mM potassium thiocyanate, microbatch, temperature 292K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | HEPES | ||
| 10 | 1 | 1 | PEG 3350 | ||
| 11 | 1 | 2 | PEG 3350 | ||
| 12 | 1 | 1 | potassium thiocyanate | ||
| 13 | 1 | 2 | potassium thiocyanate | ||
| 2 | 1 | 2 | HEPES | ||
| 3 | 1 | 1 | sodium chloride | ||
| 4 | 1 | 2 | sodium chloride | ||
| 5 | 1 | 1 | TCEP | ||
| 6 | 1 | 2 | TCEP | ||
| 7 | 1 | 1 | spermidine | ||
| 8 | 1 | 1 | sodium cacodylate | ||
| 9 | 1 | 2 | sodium cacodylate |






