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2QBY

Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus)

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyCCD
Collection date2006-04-20
DetectorADSC QUANTUM 210
Wavelength(s)1.11111, 0.979578, 0.979733, 0.987379
Spacegroup nameC 2 2 21
Unit cell lengths77.649, 199.143, 213.405
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 3.350
R-factor0.2262
Rwork0.226
R-free0.26920
Structure solution methodMAD
Starting model (for MR)1fnn
RMSD bond length0.005
RMSD bond angle0.837
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMLPHARE
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.470
High resolution limit [Å]3.3503.350
Rmerge0.835
Number of reflections24287
<I/σ(I)>25.41.93
Completeness [%]98.799
Redundancy6.95.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH529225mM HEPES pH 7.5, 50mM sodium chloride, 5% glycerol, 0.5mM TCEP, 15mM spermidine, 15mM sodium cacodylate pH 5.0, 4.4% (w/v) PEG 3350 and 25mM potassium thiocyanate, microbatch, temperature 292K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111HEPES
1011PEG 3350
1112PEG 3350
1211potassium thiocyanate
1312potassium thiocyanate
212HEPES
311sodium chloride
412sodium chloride
511TCEP
612TCEP
711spermidine
811sodium cacodylate
912sodium cacodylate

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PDB entries from 2024-07-17

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