2QBY
Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus)
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-04-20 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1.11111, 0.979578, 0.979733, 0.987379 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 77.649, 199.143, 213.405 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 3.350 |
R-factor | 0.2262 |
Rwork | 0.226 |
R-free | 0.26920 |
Structure solution method | MAD |
Starting model (for MR) | 1fnn |
RMSD bond length | 0.005 |
RMSD bond angle | 0.837 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.470 |
High resolution limit [Å] | 3.350 | 3.350 |
Rmerge | 0.835 | |
Number of reflections | 24287 | |
<I/σ(I)> | 25.4 | 1.93 |
Completeness [%] | 98.7 | 99 |
Redundancy | 6.9 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5 | 292 | 25mM HEPES pH 7.5, 50mM sodium chloride, 5% glycerol, 0.5mM TCEP, 15mM spermidine, 15mM sodium cacodylate pH 5.0, 4.4% (w/v) PEG 3350 and 25mM potassium thiocyanate, microbatch, temperature 292K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | HEPES | ||
10 | 1 | 1 | PEG 3350 | ||
11 | 1 | 2 | PEG 3350 | ||
12 | 1 | 1 | potassium thiocyanate | ||
13 | 1 | 2 | potassium thiocyanate | ||
2 | 1 | 2 | HEPES | ||
3 | 1 | 1 | sodium chloride | ||
4 | 1 | 2 | sodium chloride | ||
5 | 1 | 1 | TCEP | ||
6 | 1 | 2 | TCEP | ||
7 | 1 | 1 | spermidine | ||
8 | 1 | 1 | sodium cacodylate | ||
9 | 1 | 2 | sodium cacodylate |