Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2O19

Structure of E. coli topoisomersae III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 5.5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2003-01-15
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9479
Spacegroup nameP 43 21 2
Unit cell lengths102.160, 102.160, 451.720
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.050 - 2.450
R-factor0.214
Rwork0.212
R-free0.24600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1d6m 1i7d
RMSD bond length0.010
RMSD bond angle1.220
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareAMoRE
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.05229.0502.510
High resolution limit [Å]2.45010.9602.450
Rmerge0.0910.0320.302
Total number of observations343821988
Number of reflections87792
<I/σ(I)>6.817.62.6
Completeness [%]98.390.694.1
Redundancy3.93.23.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52951.5 M (NH4)SO4, 0.1 M Sodium citrate, 0.5 m NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)SO4
211Sodium citrate
311NaCl
411HOH
512(NH4)SO4
612Sodium citrate
712NaCl
812HOH

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon