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2BGK

X-Ray structure of apo-Secoisolariciresinol Dehydrogenase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Spacegroup nameC 2 2 21
Unit cell lengths107.340, 133.560, 69.350
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution10.000 - 1.600
R-factor0.197
Rwork0.197
R-free0.22600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1nff
RMSD bond length0.010
RMSD bond angle2.700
Data reduction softwareHKL-2000
Data scaling softwareCrystalClear
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.700
High resolution limit [Å]1.6001.600
Rmerge0.0400.240
Number of reflections93528
<I/σ(I)>12.13.5
Completeness [%]99.799.7
Redundancy2.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
18.5pH 8.50

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PDB entries from 2024-09-18

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