2B4T
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Plasmodium falciparum at 2.25 Angstrom resolution reveals intriguing extra electron density in the active site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-03-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9807 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.687, 106.056, 91.057 |
Unit cell angles | 90.00, 107.24, 90.00 |
Refinement procedure
Resolution | 43.480 - 2.500 |
R-factor | 0.17575 |
Rwork | 0.174 |
R-free | 0.21677 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1j0x |
RMSD bond length | 0.007 |
RMSD bond angle | 1.080 |
Data reduction software | MOSFLM |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.625 | 2.640 |
High resolution limit [Å] | 2.500 | 2.500 |
Number of reflections | 42843 | |
<I/σ(I)> | 7.9 | 2.2 |
Completeness [%] | 98.0 | 97.8 |
Redundancy | 3.5 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 30% PEG 3350; 200 MILLIMOLAR NA F; 100 MILLIMOLAR BIS-TRIS-PROPANE, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 30% PEG 3350; 200 MILLIMOLAR NA F; 100 MILLIMOLAR BIS-TRIS-PROPANE, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 30% PEG 3350; 200 MILLIMOLAR NA F; 100 MILLIMOLAR BIS-TRIS-PROPANE, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |