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2AZ1

Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameP 21 21 21
Unit cell lengths69.280, 108.700, 119.650
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.350
R-factor0.22035
Rwork0.217
R-free0.28944
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1nue
RMSD bond length0.021
RMSD bond angle1.776
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.440
High resolution limit [Å]2.3002.300
Rmerge0.0900.800
Number of reflections40514
<I/σ(I)>9.31
Completeness [%]99.197.2
Redundancy2.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52930.2M CaCl2, 0.1M HEPES-Na, pH 7.5, 28% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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PDB entries from 2024-06-26

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