Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YBK

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyCCD
Collection date2010-07-24
DetectorADSC QUANTUM 315
Spacegroup nameP 21 21 2
Unit cell lengths101.127, 149.332, 56.525
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.070 - 2.400
R-factor0.203
Rwork0.203
R-free0.23600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ox0
RMSD bond length0.007
RMSD bond angle1.300
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareCNS (1.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0702.490
High resolution limit [Å]2.4002.400
Rmerge0.1000.810
Number of reflections32359
<I/σ(I)>13.742
Completeness [%]94.295.3
Redundancy5.35.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52770.1M CITRATE PH 5.5, 4MM NICL2, 20% PEG 3350, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 277K.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon