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2W51

Human mesencephalic astrocyte-derived neurotrophic factor (MANF)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]93
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameP 61
Unit cell lengths96.500, 96.500, 35.050
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.870 - 2.800
R-factor0.281
Rwork0.280
R-free0.30500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)CDNF N-TERMINAL DOMAIN
RMSD bond length0.007
RMSD bond angle0.978
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.0400.540
Number of reflections32978
<I/σ(I)>20.12.6
Completeness [%]97.094
Redundancy7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5277NEEDLE CRYSTALS OF MANF WERE TYPICALLY OBTAINED WITHIN 1 TO 2 WEEKS AT 4 C OVER A RESERVOIR SOLUTION OF 100 MM SODIUM CACODYLATE BUFFER, PH 6.5, 0.2 M MGAC2 AND 12-18 % PEG 8000.

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PDB entries from 2024-05-15

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