2RF3
Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion Angles
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 120 |
Detector technology | CCD |
Collection date | 2007-05-02 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0809 |
Spacegroup name | P 32 |
Unit cell lengths | 26.587, 26.587, 98.238 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.740 - 1.750 |
R-factor | 0.17829 |
Rwork | 0.176 |
R-free | 0.22495 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ehv |
RMSD bond length | 0.007 |
RMSD bond angle | 1.757 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.740 | 1.796 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.049 | |
Number of reflections | 6884 | |
<I/σ(I)> | 23.2 | |
Completeness [%] | 88.0 | 60 |
Redundancy | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 0.75 mM of oligonucleotide, 20 mM sodium cacodylate, 6 mM NaCl, 40 mM KCl and 5% MPD against 0.7 mL of 35% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 0.75 mM of oligonucleotide, 20 mM sodium cacodylate, 6 mM NaCl, 40 mM KCl and 5% MPD against 0.7 mL of 35% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | sodium cacodylate | ||
2 | 1 | 1 | NaCl | ||
3 | 1 | 1 | KCl | ||
4 | 1 | 1 | MPD | ||
5 | 1 | 2 | sodium cacodylate | ||
6 | 1 | 2 | NaCl | ||
7 | 1 | 2 | KCl | ||
8 | 1 | 2 | MPD |