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2RF3

Crystal Structure of Tricyclo-DNA: An Unusual Compensatory Change of Two Adjacent Backbone Torsion Angles

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]120
Detector technologyCCD
Collection date2007-05-02
DetectorADSC QUANTUM 315
Wavelength(s)1.0809
Spacegroup nameP 32
Unit cell lengths26.587, 26.587, 98.238
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution32.740 - 1.750
R-factor0.17829
Rwork0.176
R-free0.22495
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ehv
RMSD bond length0.007
RMSD bond angle1.757
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]32.7401.796
High resolution limit [Å]1.7501.750
Rmerge0.049
Number of reflections6884
<I/σ(I)>23.2
Completeness [%]88.060
Redundancy3.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72910.75 mM of oligonucleotide, 20 mM sodium cacodylate, 6 mM NaCl, 40 mM KCl and 5% MPD against 0.7 mL of 35% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
1VAPOR DIFFUSION, HANGING DROP72910.75 mM of oligonucleotide, 20 mM sodium cacodylate, 6 mM NaCl, 40 mM KCl and 5% MPD against 0.7 mL of 35% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111sodium cacodylate
211NaCl
311KCl
411MPD
512sodium cacodylate
612NaCl
712KCl
812MPD

219869

PDB entries from 2024-05-15

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