Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OYL

Endo-glycoceramidase II from Rhodococcus sp.: cellobiose-like imidazole complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]100
Detector technologyCCD
Collection date2005-12-10
DetectorADSC QUANTUM 315
Wavelength(s)0.9796
Spacegroup nameP 1 21 1
Unit cell lengths53.752, 93.246, 94.432
Unit cell angles90.00, 98.35, 90.00
Refinement procedure
Resolution53.150 - 1.800
R-factor0.175
Rwork0.174
R-free0.20500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2osw
RMSD bond length0.007
RMSD bond angle1.111
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]66.0001.900
High resolution limit [Å]1.8001.800
Rmerge0.0690.390
Total number of observations89817
Number of reflections85295
<I/σ(I)>8.12
Completeness [%]100.0100
Redundancy7.37.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.529420% (w/v) PEG 3350; 0.175 M NaCl; 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon