Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2NYI

Crystal Structure of an Unknown Protein from Galdieria sulphuraria

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyCCD
Collection date2006-11-08
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97923, 0.96400
Spacegroup nameP 1 21 1
Unit cell lengths55.013, 79.991, 55.530
Unit cell angles90.00, 111.25, 90.00
Refinement procedure
Resolution45.620 - 1.800
R-factor0.178
Rwork0.176
R-free0.21400
Structure solution methodMAD
RMSD bond length0.017
RMSD bond angle1.287
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareREFMAC (5.2.0005)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.62045.6161.840
High resolution limit [Å]1.8004.4401.800
Rmerge0.0710.0510.419
Number of reflections39789
<I/σ(I)>11.6732.656
Completeness [%]96.39983.2
Redundancy7.47.64.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Protein solution (10 mg/mL protein, 0.050 M Sodium chloride, 0.0003 M TCEP, 0.005 M MES pH 6.0) mixed in a 1:1 ratio with the well solution (24% PEG 8000, 0.04 M Magnesium chloride, 0.2 M Sodium fluoride, 0.10 M PIPES pH 6.5). Cryoprotection: well solution supplemented with up to 20% ethylene glycol, vapor diffusion, hanging drop, temperature 293K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon