2GDC
Structure of Vinculin VD1 / IpaA560-633 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE BW7B |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | BW7B |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2005-10-22 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 0.8423 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.684, 68.326, 96.521 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.180 - 2.740 |
R-factor | 0.24966 |
Rwork | 0.247 |
R-free | 0.29400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1syq |
RMSD bond length | 0.016 |
RMSD bond angle | 1.578 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (refmac_5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 15.190 | 41.740 | 2.890 |
High resolution limit [Å] | 2.740 | 8.660 | 2.740 |
Rmerge | 0.085 | 0.030 | 0.350 |
Number of reflections | 9559 | ||
<I/σ(I)> | 7.1 | 7 | 2.1 |
Completeness [%] | 99.0 | ||
Redundancy | 4.7 | 4.2 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 100 mM HEPES, 10% 2-propanol, 20% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |