1X9D
Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.99985 |
Spacegroup name | P 1 |
Unit cell lengths | 50.687, 53.878, 56.234 |
Unit cell angles | 89.49, 63.60, 62.61 |
Refinement procedure
Resolution | 48.800 - 1.410 |
R-factor | 0.14598 |
Rwork | 0.144 |
R-free | 0.16200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1fmi |
RMSD bond length | 0.014 |
RMSD bond angle | 1.337 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | EPMR |
Refinement software | REFMAC (refmac_5.2.0003) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.460 |
High resolution limit [Å] | 1.410 | 3.040 | 1.410 |
Rmerge | 0.102 | 0.098 | 0.129 |
Total number of observations | 8274 | 8225 | |
Number of reflections | 84600 | ||
Completeness [%] | 95.5 | 93.3 | 93.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 298 | 24% PEG 4000, 50mM ammonium sulfate, 0.1M MES, 10% 1,4-butanediol, pH 6.5, vapor diffusion, temperature 298K |