Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1W16

rat synaptotagmin 4 C2B domain in the absence of calcium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2003-11-29
DetectorCUSTOM
Spacegroup nameP 63 2 2
Unit cell lengths91.061, 91.061, 122.860
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 2.300
R-factor0.217
Rwork0.213
R-free0.25700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1k5w
RMSD bond length0.020
RMSD bond angle1.851
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareAMoRE
Refinement softwareREFMAC (5.2.0003)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.8102.340
High resolution limit [Å]2.3002.300
Rmerge0.0530.725
Number of reflections13974
<I/σ(I)>45.81.8
Completeness [%]99.695.2
Redundancy11.44.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5THE RAT SYNAPTOTAGMIN IV C2B DOMAIN WAS CRYSTALLIZED BY THE VAPOR DIFFUSION METHOD (HANGING DROP) BY MIXING 1 MICROLITER PROTEIN (IN 20 MM MES, 150 MM NACL AND 1 MM EDTA, PH 6.32) WITH 1 MICROLITER RESERVOIR SOLUTION (2.5M NACL, 0.1M CACL2, 0.1M HEPES, PH 7.5) SUSPENDED OVER 500 MICROLITERS RESERVOIR SOLUTION. HEXAGONAL CRYSTALS APPEARED OVERNIGHT AND GREW TO A FINAL SIZE OF 0.1 X 0.1 X 0.2 MM WITHIN TWO DAYS. PRIOR TO DATA COLLECTION, CRYSTALS WERE TRANSFERRED INTO CRYSTALLIZATION SOLUTION CONTAINING 4.25 M NACL, 0.1 M HEPES PH 7.5 AND 5%(V/V) ETHYLENE GLYCOL AND THEN COOLED IN LIQUID PROPANE.

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon