1VBY
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2003-02-07 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0781 |
Spacegroup name | H 3 2 |
Unit cell lengths | 108.589, 108.589, 190.519 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.160 - 2.900 |
R-factor | 0.239 |
Rwork | 0.239 |
R-free | 0.28400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.200 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.260 | 3.080 |
High resolution limit [Å] | 2.900 | 2.900 |
Number of reflections | 10698 | |
Completeness [%] | 98.2 | 95.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | MnCl2, NaCl, MPD, Sodium Cacodylate, Spermine-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | MnCl2 | ||
2 | 1 | 1 | NaCl | ||
3 | 1 | 1 | MPD | ||
4 | 1 | 1 | Sodium Cacodylate | ||
5 | 1 | 1 | Spermine-HCl | ||
6 | 1 | 2 | MnCl2 | ||
7 | 1 | 2 | NaCl | ||
8 | 1 | 2 | MPD | ||
9 | 1 | 2 | Sodium Cacodylate |