1RV6
Crystal Structure of PlGF in Complex with Domain 2 of VEGFR1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-04-01 |
Detector | MARRESEARCH |
Wavelength(s) | 1.08 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.281, 71.979, 115.346 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.450 |
R-factor | 0.19843 |
Rwork | 0.194 |
R-free | 0.26000 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1flt |
RMSD bond length | 0.013 |
RMSD bond angle | 1.600 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.07) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.540 |
High resolution limit [Å] | 2.450 | 2.450 |
Rmerge | 0.046 * | 0.161 * |
Total number of observations | 72785 * | |
Number of reflections | 15482 | |
<I/σ(I)> | 16 | |
Completeness [%] | 99.0 | 99.2 |
Redundancy | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6.5 | pH 6.5 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG4000 | 25 (%) | |
2 | 1 | reservoir | ammonium sulfate | 0.1 (M) | |
3 | 1 | reservoir | 0.02 (%) | ||
4 | 1 | reservoir | BTP | 0.1 (M) | pH6.5 |
5 | 1 | drop | protein | 6.5 (mg/ml) |