1OFY
three dimensional structure of the reduced form of nine-heme cytochrome c at ph 7.5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 110 |
Detector technology | CCD |
Detector | ADSC CCD |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.400, 105.660, 80.940 |
Unit cell angles | 90.00, 103.35, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.000 |
R-factor | 0.2151 |
R-free | 0.23700 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 19hc |
RMSD bond length | 0.011 |
RMSD bond angle | 0.020 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.064 | 0.371 |
Total number of observations | 177499 * | |
Number of reflections | 65158 | |
<I/σ(I)> | 11 | 2 |
Completeness [%] | 97.6 | 98 |
Redundancy | 2.72 | 2.69 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.5 | Coelho, A.V., (1996) Protein Sci., 5, 1189. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG4000 | 20 (%(w/v)) | |
2 | 1 | reservoir | HEPES | 0.1 (M) | |
3 | 1 | reservoir | 0.2 (M) |