1N59
Crystal structure of the Murine class I Major Histocompatibility Complex of H-2KB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I711 |
Synchrotron site | MAX II |
Beamline | I711 |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 2000-06-03 |
Detector | MARRESEARCH |
Wavelength(s) | 1.018 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.551, 88.574, 120.090 |
Unit cell angles | 90.00, 93.72, 90.00 |
Refinement procedure
Resolution | 20.000 * - 2.950 |
R-factor | 0.23195 |
Rwork | 0.229 |
R-free | 0.28600 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1osz |
RMSD bond length | 0.018 |
RMSD bond angle | 1.890 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.950 |
High resolution limit [Å] | 2.950 * | 2.950 * |
Rmerge | 0.130 * | 0.242 * |
Total number of observations | 46919 * | |
Number of reflections | 20422 * | |
<I/σ(I)> | 8.4 | 3.5 |
Completeness [%] | 86.8 * | 62.2 |
Redundancy | 2.3 | 2.06 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | PEG8000, magnesium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | sodium potassium phosphate | 1.85 (M) | |
2 | 1 | reservoir | MPD | 1 (%) | |
3 | 1 | drop | protein | 5 (mg/ml) | |
4 | 1 | drop | Tris-Cl | 20 (mM) | pH7.0 |