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1LDK

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]170
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)0.928
Spacegroup nameP 21 21 2
Unit cell lengths219.378, 50.529, 158.610
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 3.200

*

R-factor0.289

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Rwork0.289
R-free0.33100
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007

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RMSD bond angle1.700

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000
High resolution limit [Å]3.100
Rmerge0.091

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0.332

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Total number of observations123884

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Number of reflections30847
Completeness [%]88.8

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63.5

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP74

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peg4k, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
1VAPOR DIFFUSION, HANGING DROP74

*

peg4k, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirBTP100 (mM)
21reservoirPEG40007-9 (%)
31reservoir200-400 (mM)
41reservoirdithiothreitol5 (mM)pH7.0
51dropprotein10-20 (mg/ml)

226707

PDB entries from 2024-10-30

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