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1KVK

The Structure of Binary complex between a Mammalian Mevalonate Kinase and ATP: Insights into the Reaction Mechanism and Human Inherited Disease

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]277
Wavelength(s)1.54
Spacegroup nameP 21 21 2
Unit cell lengths78.630, 118.700, 42.840
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution60.000

*

- 2.400
R-factor0.217

*

Rwork0.217
R-free0.26600
Structure solution methodMAD
RMSD bond length0.008
RMSD bond angle1.300
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]65.5502.490
High resolution limit [Å]2.400

*

2.400
Rmerge0.054

*

0.305

*

Total number of observations30833

*

Number of reflections14000

*

1011

*

Completeness [%]86.977.8

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.54

*

Hepes, MgCl2, ATP, PEG-5KMME, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein13 (mg/ml)
21dropATP1 (mM)
31drop2 (mM)
41reservoirHEPES100 (mM)pH7.5
51reservoirPEG5000 MME17.5 (%)

219140

PDB entries from 2024-05-01

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