1KIM
CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH DEOXYTHYMIDINE
Replaces: 1KINExperimental procedure
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 1997-04 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 113.400, 116.600, 108.200 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 12.000 - 2.140 |
R-factor | 0.209 |
Rwork | 0.209 |
R-free | 0.27900 |
Structure solution method | MIR + NCS IMPROVEMENT AND SOLVENT FLATTENING |
RMSD bond length | 0.013 |
RMSD bond angle | 22.770 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLOMON |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.000 | 2.250 |
High resolution limit [Å] | 2.140 | 2.140 |
Rmerge | 0.081 * | 0.376 * |
Number of reflections | 39842 | |
<I/σ(I)> | 5 | 3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.7 | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 25 * | HANGING-DROP: 8ML PROTEIN SOLUTION PLUS 4ML PRECIPITATING SOLUTION EQUILIBRATED AGAINST PRECIPITATING SOLUTION AT 25OC. (PROTEIN SOLUTION: HSV-TK 1.0MG/ML; 40MM TRIS-CL PH 7.5; 3MM DTT; 0.2MM DT. PRECIPITATING SOLUTION: 30% SATURATED AMMONIUM SULFATE; 200MM TRIS-CL PH 6.75; 3MM DTT; 0.2 MM DT.), vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 0.67 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 93.4 (mM) | |
3 | 1 | drop | dithiothreitol | 3.0 (mM) | |
4 | 1 | drop | deoxythymidine | 0.2 (mM) | |
5 | 1 | drop | ammonium sulfate | 10.0 (%sat) | |
6 | 1 | reservoir | ammonium sulfate | 30 (%sat) | |
7 | 1 | reservoir | Tris-HCl | 200 (mM) | |
8 | 1 | reservoir | dithiothreitol | 3 (mM) | |
9 | 1 | reservoir | deoxythymidine | 0.2 (mM) |