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1KIM

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH DEOXYTHYMIDINE

Replaces:  1KIN
Experimental procedure
Temperature [K]120
Detector technologyIMAGE PLATE
Collection date1997-04
DetectorRIGAKU RAXIS IIC
Spacegroup nameC 2 2 21
Unit cell lengths113.400, 116.600, 108.200
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution12.000 - 2.140
R-factor0.209
Rwork0.209
R-free0.27900
Structure solution methodMIR + NCS IMPROVEMENT AND SOLVENT FLATTENING
RMSD bond length0.013
RMSD bond angle22.770

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLOMON
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.0002.250
High resolution limit [Å]2.1402.140
Rmerge0.081

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0.376

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Number of reflections39842
<I/σ(I)>53
Completeness [%]100.0100
Redundancy6.76.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.525

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HANGING-DROP: 8ML PROTEIN SOLUTION PLUS 4ML PRECIPITATING SOLUTION EQUILIBRATED AGAINST PRECIPITATING SOLUTION AT 25OC. (PROTEIN SOLUTION: HSV-TK 1.0MG/ML; 40MM TRIS-CL PH 7.5; 3MM DTT; 0.2MM DT. PRECIPITATING SOLUTION: 30% SATURATED AMMONIUM SULFATE; 200MM TRIS-CL PH 6.75; 3MM DTT; 0.2 MM DT.), vapor diffusion - hanging drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein0.67 (mg/ml)
21dropTris-HCl93.4 (mM)
31dropdithiothreitol3.0 (mM)
41dropdeoxythymidine0.2 (mM)
51dropammonium sulfate10.0 (%sat)
61reservoirammonium sulfate30 (%sat)
71reservoirTris-HCl200 (mM)
81reservoirdithiothreitol3 (mM)
91reservoirdeoxythymidine0.2 (mM)

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PDB entries from 2024-07-24

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