1JPA
Crystal Structure of unphosphorylated EphB2 receptor tyrosine kinase and juxtamembrane region
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-D |
Synchrotron site | APS |
Beamline | 14-BM-D |
Detector technology | CCD |
Collection date | 2000-05-28 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9790, 0.9788, 0.9770 |
Spacegroup name | P 1 |
Unit cell lengths | 47.052, 57.616, 67.742 |
Unit cell angles | 112.95, 103.17, 91.58 |
Refinement procedure
Resolution | 25.650 - 1.910 |
R-factor | 0.231 * |
Rwork | 0.231 |
R-free | 0.27000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | apo-form from MAD data |
RMSD bond length | 0.007 |
RMSD bond angle | 21.500 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
High resolution limit [Å] | 1.900 * | |
Rmerge | 0.033 * | 0.146 * |
Total number of observations | 80035 * | |
Number of reflections | 43865 * | |
Completeness [%] | 90.3 * | 55.9 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 301 | HEPES, magnesium chloride, PEG 4000, isopropanol, ethylene glycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 301K |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 301 | HEPES, magnesium chloride, PEG 4000, isopropanol, ethylene glycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 301K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12.5 (mg/ml) | |
2 | 1 | reservoir | HEPES | 0.1 (M) | |
3 | 1 | reservoir | 0.2 (M) | ||
4 | 1 | reservoir | PEG4000 | 10 (%(w/v)) | |
5 | 1 | reservoir | isopropanol | 10 (%(v/v)) | |
6 | 1 | reservoir | ethylene glycol | 15 (%(v/v)) |