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1JPA

Crystal Structure of unphosphorylated EphB2 receptor tyrosine kinase and juxtamembrane region

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Detector technologyCCD
Collection date2000-05-28
DetectorADSC QUANTUM 4
Wavelength(s)0.9790, 0.9788, 0.9770
Spacegroup nameP 1
Unit cell lengths47.052, 57.616, 67.742
Unit cell angles112.95, 103.17, 91.58
Refinement procedure
Resolution25.650 - 1.910
R-factor0.231

*

Rwork0.231
R-free0.27000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)apo-form from MAD data
RMSD bond length0.007
RMSD bond angle21.500

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
High resolution limit [Å]1.900

*

Rmerge0.033

*

0.146

*

Total number of observations80035

*

Number of reflections43865

*

Completeness [%]90.3

*

55.9

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7301HEPES, magnesium chloride, PEG 4000, isopropanol, ethylene glycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 301K
1VAPOR DIFFUSION, HANGING DROP7301HEPES, magnesium chloride, PEG 4000, isopropanol, ethylene glycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 301K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12.5 (mg/ml)
21reservoirHEPES0.1 (M)
31reservoir0.2 (M)
41reservoirPEG400010 (%(w/v))
51reservoirisopropanol10 (%(v/v))
61reservoirethylene glycol15 (%(v/v))

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PDB entries from 2024-10-30

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