Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JP4

Crystal Structure of an Enzyme Displaying both Inositol-Polyphosphate 1-Phosphatase and 3'-Phosphoadenosine-5'-Phosphate Phosphatase Activities

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSRS BEAMLINE PX9.6
Synchrotron siteSRS
BeamlinePX9.6
Temperature [K]100
Detector technologyCCD
Collection date2000-04-20
DetectorADSC QUANTUM 4
Wavelength(s)1.244
Spacegroup nameP 21 21 21
Unit cell lengths48.635, 74.493, 92.827
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution57.700

*

- 1.690
R-factor0.147

*

Rwork0.147
R-free0.18000

*

Structure solution methodMAD
RMSD bond length0.014
RMSD bond angle1.670

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSnB (v2.0)
Refinement softwareREFMAC (5.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.9401.780
High resolution limit [Å]1.6901.690
Rmerge0.0900.369
Number of reflections38295
<I/σ(I)>12.44
Completeness [%]99.6

*

99.6
Redundancy5.35.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

6.5293PEG 8K, magnesium acetate, sodium cacodylate, lithium chloride, magnesium chloride, PAP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
1Vapor diffusion

*

6.5293PEG 8K, magnesium acetate, sodium cacodylate, lithium chloride, magnesium chloride, PAP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG800020 (%(w/v))
21reservoirmagnesium acetate0.2 (M)
31reservoirsodium cacodylate0.1 (M)pH6.5
41dropprotein10 (mg/ml)
51drop5 (mM)
61drop6 (mM)
71dropPAP0.6 (mM)

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon