1JM6
Pyruvate dehydrogenase kinase, isozyme 2, containing ADP
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU RU300 |
| Temperature [K] | 110 |
| Detector technology | IMAGE PLATE |
| Collection date | 1999-04-01 |
| Detector | RIGAKU RAXIS II |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 71.421, 109.874, 71.414 |
| Unit cell angles | 90.00, 104.52, 90.00 |
Refinement procedure
| Resolution | 6.000 - 2.500 |
| R-factor | 0.199 * |
| Rwork | 0.202 |
| R-free | 0.26190 |
| Structure solution method | AB INITIO |
| RMSD bond length | 0.008 * |
| RMSD bond angle | 1.400 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | SOLVE |
| Refinement software | SHELXL-97 |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 20.000 | |
| High resolution limit [Å] | 2.400 | 2.500 * |
| Rmerge | 0.042 | 0.287 * |
| Number of reflections | 35685 | |
| <I/σ(I)> | 23.1 | |
| Completeness [%] | 88.3 | 76.1 * |
| Redundancy | 3.3 | 4.2 * |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion * | 7 | 293 | PEG 6k, Imidazole, ADP, Magnesium Chloride, Iodo-propionic Acid, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
| 1 | Vapor diffusion * | 7 | 293 | PEG 6k, Imidazole, ADP, Magnesium Chloride, Iodo-propionic Acid, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 10 (mg/ml) | |
| 2 | 1 | reservoir | imidazole | 100 (mM) | or 100mM MES |
| 3 | 1 | reservoir | 500 (mM) | ||
| 4 | 1 | reservoir | 3-iodopropionic acid | 3.5 (mM) | |
| 5 | 1 | reservoir | ADP | 3.5 (mM) | |
| 6 | 1 | reservoir | 7 (mM) | ||
| 7 | 1 | reservoir | PEG6000 | 6.5 (%) | |
| 8 | 1 | reservoir | ethylene glycol | 1.0 (%) |
