1JJ9
Crystal Structure of MMP8-Barbiturate Complex Reveals Mechanism for Collagen Substrate Recognition
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 275 |
Detector technology | AREA DETECTOR |
Collection date | 1996-06-27 |
Detector | XENTRONICS |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 61.020, 69.230, 88.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.000 |
R-factor | 0.211 * |
Rwork | 0.211 |
R-free | 0.29600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 * |
RMSD bond angle | 1.700 * |
Data reduction software | X-GEN |
Data scaling software | CCP4 ((TRUNCATE)) |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.093 * | 0.410 * |
Number of reflections | 14371 | |
Completeness [%] | 85.0 | 85 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6 | 291 | PEG6000, 10mM CaCl2, 100mM NaCl, Cacodylate pH6.0, VAPOR DIFFUSION, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 3.6 (mg/ml) | |
2 | 1 | drop | cacodylate | 40 (mM) | |
3 | 1 | drop | 4 (mM) | ||
4 | 1 | drop | 40 (mM) | ||
5 | 1 | drop | PEG6000 | 4 (%) | |
6 | 1 | reservoir | phosphate | 0.5-0.6 (M) |