1J8E
Crystal structure of ligand-binding repeat CR7 from LRP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 200 |
Detector technology | CCD |
Collection date | 2001-02-12 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 27.588, 35.359, 36.288 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.960 - 1.850 |
R-factor | 0.186 * |
Rwork | 0.186 |
R-free | 0.22200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Composite search model constructed based on coordinates of 1AJJ 1d2l and 1CR8. |
RMSD bond length | 0.005 |
RMSD bond angle | 1.100 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 1.970 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.072 | 0.268 |
Total number of observations | 86028 * | |
Number of reflections | 2911 * | |
<I/σ(I)> | 20 | |
Completeness [%] | 88.5 | 56.6 |
Redundancy | 5 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 3.8 | 18 * | 0.02M Na-acetate, 0.1M CaCl2, 0.3M NaCl, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 6 (mg/ml) | |
2 | 1 | reservoir | 0.3 (M) | ||
3 | 1 | reservoir | sodium acetate | 20 (mM) | pH3.8 |
4 | 1 | reservoir | 100 (mM) |