1IG9
Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-10-14 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.787, 118.602, 127.997 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.750 - 2.600 |
R-factor | 0.197 |
Rwork | 0.197 |
R-free | 0.25800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1clq with non-protein atoms removed |
RMSD bond length | 0.006 |
RMSD bond angle | 1.200 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.086 | 0.610 |
Number of reflections | 38733 | |
<I/σ(I)> | 15.4 | 2.7 |
Completeness [%] | 99.4 | 99.8 |
Redundancy | 5 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 5.6 * | 4 * | Wang, J., (1997) Cell (Cambridge,Mass.), 89, 1087. * |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 350 monomethyl ether | ||
2 | 1 | 1 | calcium chloride | ||
3 | 1 | 1 | sodium cacodylate |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 7.5 (mg/ml) | |
2 | 1 | drop | sodium citrate | 0.05 (M) | |
3 | 1 | drop | sodium potassium tartrate | 0.025 (M) | |
4 | 1 | drop | ammonium sulfate | 0.5 (M) | |
5 | 1 | reservoir | sodium citrate | 0.1 (M) | |
6 | 1 | reservoir | sodium potassium tartrate | 0.5 (M) | |
7 | 1 | reservoir | ammonium sulfate | 1.0 (M) |