1GZG
Complex of a Mg2-dependent porphobilinogen synthase from Pseudomonas aeruginosa (mutant D139N) with 5-fluorolevulinic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MPG/DESY, HAMBURG BEAMLINE BW6 |
Synchrotron site | MPG/DESY, HAMBURG |
Beamline | BW6 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2001-10-15 |
Detector | MARRESEARCH |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 127.131, 127.131, 86.145 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.300 * - 1.660 |
Rwork | 0.175 |
R-free | 0.19800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1b4k |
RMSD bond length | 0.020 * |
RMSD bond angle | 1.900 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | REFMAC (5.0.32) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.720 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.116 | 0.394 |
Total number of observations | 433947 * | |
Number of reflections | 82775 | |
<I/σ(I)> | 11 | 4.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 5.2 | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | sparse matrix screening * | 7.5 * | PROTEIN SOLUTION: 12 MG/ML PBGS MUTANT D139N IN 50 MM K-HEPES, 10 MM MGCL2. CRYSTALLIZATION SOLUTION: 0.99 ML PROTEIN SOLUTION = 0.01 ML 2MM 5F-LA IN 50 MM K-HEPES, 10 MM MGCL2. RESERVOIR SOLUTION: 1 M NA/K-TARTRATE, 0.2M LI2SO4, 0.1 M CHES PH = 9,5. SITTING DROP: 0.003 ML CRYSTALLISATION SOLUTION + 0.003 ML RESERVOIR SOLUTION |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | potassium-HEPES | 50 (mM) | pH7.5 |
2 | 1 | 1 | 10 (mM) | ||
3 | 1 | 1 | protein | 12 (mg/ml) | |
4 | 1 | 1 | 5F-LA | 2 (mM) | |
5 | 1 | 2 | glycerol | 30 (%(v/v)) |