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1FVD

X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING

Experimental procedure
Spacegroup nameP 1
Unit cell lengths39.200, 80.200, 86.100
Unit cell angles113.10, 92.70, 102.60
Refinement procedure
Resolution10.000 - 2.500
R-factor0.179
Rwork0.179
RMSD bond length0.017
RMSD bond angle3.400
Phasing softwareX-PLOR
Refinement softwareX-PLOR
Data quality characteristics
 Overall
Low resolution limit [Å]15.000

*

High resolution limit [Å]2.500

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Rmerge0.119

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Total number of observations50304

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Number of reflections27905

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirPEG340015 (%(w/v))
31reservoirimidazole malate50 (mM)

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PDB entries from 2024-11-06

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