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1E2F

Human thymidylate kinase complexed with thymidine monophosphate, adenosine diphosphate and a magnesium-ion

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE BW7B
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineBW7B
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMAR scanner 345 mm plate
Spacegroup nameP 43 21 2
Unit cell lengths101.300, 101.300, 49.300
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution71.700 - 1.600
R-factor0.198

*

Rwork0.210
R-free0.26400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.700
Data reduction softwareXDS
Data scaling softwareXSCALE
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]71.7001.700
High resolution limit [Å]1.6001.600
Rmerge0.046

*

0.155

*

Total number of observations103211

*

Number of reflections33305
<I/σ(I)>20.94.4
Completeness [%]96.698
Redundancy3.13.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

820

*

VAPOR DIFFUSION AT 293 K MIXING 2 MICROLITERS OF A SOLUTION CONTAINING THE ENZYME, NUCLEOTIDES, AND 50 MM MGCL2 WITH 2 MICROLITERS OF A SOLUTION CONTAINING 21% PEG 3350, 100 MM TRIS HCL PH 8.0 AND 50 MICROLITERS OF DEAD SEA WATER.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropTMP1 (mM)
21dropAppNHp20 (mM)
31dropTMPK28 (mg/ml)
41drop50 (mM)
51drop200 (mM)
61dropTris-HCl50 (mM)
71reservoirPEG335015-22 (%(w/v))
81reservoirdead sea water5 (%(v/v))
91reservoirTris-HCl100 (mM)

218853

PDB entries from 2024-04-24

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