1DB5
HUMAN S-PLA2 IN COMPLEX WITH INDOLE 6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 1994-11-03 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 76.360, 76.360, 91.530 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.000 - 2.800 |
R-factor | 0.172 * |
Rwork | 0.196 |
R-free | 0.24000 |
RMSD bond length | 0.018 * |
RMSD bond angle | 2.100 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (98.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.850 |
High resolution limit [Å] | 2.200 * | 2.800 |
Rmerge | 0.090 * | 0.274 |
Number of reflections | 4159 | |
<I/σ(I)> | 14.2 | 3.3 |
Completeness [%] | 70.0 * | 99.5 |
Redundancy | 2.5 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 297 | 10 mg/ml of protein; 50 mM buffer (MES or MOPS), 1% pyridine., pH 7.0, VAPOR DIFFUSION, temperature 297K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | drop | MES | 50 (mM) | or MOPS |
3 | 1 | drop | sodium chloride | 80-92 (%sat) | |
4 | 1 | drop | pyridine | 1 (%) |