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1C6Y

ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Spacegroup nameP 21 21 2
Unit cell lengths58.440, 88.260, 42.940
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution8.000 - 2.500
R-factor0.18
Rwork0.180
R-free0.31000
RMSD bond length0.017
RMSD bond angle2.100
Refinement softwareX-PLOR
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

2.590
High resolution limit [Å]2.500

*

2.500
Rmerge0.0520.165

*

Total number of observations35099

*

Number of reflections7254676

*

Completeness [%]89.084
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1other

*

5

*

inhibitor-protein mixture and the reservoir solution were mixed in a 1:1(v/v) ratio

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme4-6 (mg/ml)
21dropMES10 (mM)
31dropdithiothreitol1 (mM)
41dropEDTA1 (mM)
51drop3 (mM)
61dropinhibitormixed with the protein containing buffer in a molar ratio of 1:3 to 1:5, with a final DMSO concentration of 2-5%
71reservoir0.6-0.8 (M)
81reservoir0.1 (M)

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PDB entries from 2024-07-17

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