Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1AD8

COMPLEX OF THROMBIN WITH AND INHIBITOR CONTAINING A NOVEL P1 MOIETY

Experimental procedure
Source typeROTATING ANODE
Source detailsSIEMENS
Temperature [K]277
Detector technologyIMAGE PLATE
Collection date1995-07-11
DetectorRIGAKU
Spacegroup nameC 1 2 1
Unit cell lengths70.550, 72.050, 73.000
Unit cell angles90.00, 101.00, 90.00
Refinement procedure
Resolution8.000 - 2.000
R-factor0.205
Rwork0.205
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)THROMBIN-HIRUGEN-PEPTIDE 1A COMPLEX (UNPUBLISHED)
RMSD bond length0.012
RMSD bond angle25.400

*

Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]1000.0002.100
High resolution limit [Å]2.0002.000
Rmerge0.049

*

Total number of observations61748

*

Number of reflections23326
<I/σ(I)>223.7
Completeness [%]95.894.5
Redundancy2.652.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.3A DROP WITH 1.62 MG/ML PROTEIN, 0.375 M NACL, 0.09 M PHOSPHATE BUFFER (PH 7.3), 0.5 MM AZIDE, 4.9 MM INHIBITOR AND 15% (W/V) PEG8000 WAS EQUILIBRATED AGAINST 30% (W/V)PEG8000 IN 0.08 M PHOSPHATE BUFFER (PH 7.3), USING A HANGING DROP SETUP., vapor diffusion - hanging drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein1.62 (mg/ml)
21drop0.375 (M)
31dropphosphate0.09 (M)
41drop0.5 (mM)
51droppeptide II4.9 (mM)
61dropPEG800015 (%(w/v))
71reservoirPEG800030 (%(w/v))
81reservoirphosphate0.08 (M)
91reservoir0.5 (mM)

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon