1AD8
COMPLEX OF THROMBIN WITH AND INHIBITOR CONTAINING A NOVEL P1 MOIETY
Experimental procedure
Source type | ROTATING ANODE |
Source details | SIEMENS |
Temperature [K] | 277 |
Detector technology | IMAGE PLATE |
Collection date | 1995-07-11 |
Detector | RIGAKU |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 70.550, 72.050, 73.000 |
Unit cell angles | 90.00, 101.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.000 |
R-factor | 0.205 |
Rwork | 0.205 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | THROMBIN-HIRUGEN-PEPTIDE 1A COMPLEX (UNPUBLISHED) |
RMSD bond length | 0.012 |
RMSD bond angle | 25.400 * |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 1000.000 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.049 * | |
Total number of observations | 61748 * | |
Number of reflections | 23326 | |
<I/σ(I)> | 22 | 3.7 |
Completeness [%] | 95.8 | 94.5 |
Redundancy | 2.65 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | A DROP WITH 1.62 MG/ML PROTEIN, 0.375 M NACL, 0.09 M PHOSPHATE BUFFER (PH 7.3), 0.5 MM AZIDE, 4.9 MM INHIBITOR AND 15% (W/V) PEG8000 WAS EQUILIBRATED AGAINST 30% (W/V)PEG8000 IN 0.08 M PHOSPHATE BUFFER (PH 7.3), USING A HANGING DROP SETUP., vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 1.62 (mg/ml) | |
2 | 1 | drop | 0.375 (M) | ||
3 | 1 | drop | phosphate | 0.09 (M) | |
4 | 1 | drop | 0.5 (mM) | ||
5 | 1 | drop | peptide II | 4.9 (mM) | |
6 | 1 | drop | PEG8000 | 15 (%(w/v)) | |
7 | 1 | reservoir | PEG8000 | 30 (%(w/v)) | |
8 | 1 | reservoir | phosphate | 0.08 (M) | |
9 | 1 | reservoir | 0.5 (mM) |