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1ZLY

The structure of human glycinamide ribonucleotide transformylase in complex with alpha,beta-N-(hydroxyacetyl)-D-ribofuranosylamine and 10-formyl-5,8,dideazafolate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]282
Detector technologyIMAGE PLATE
Collection date1997-02-25
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameP 32 2 1
Unit cell lengths75.900, 75.900, 101.000
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.000 - 2.070
R-factor0.2
Rwork0.190
R-free0.23600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1zlx
RMSD bond length0.006
RMSD bond angle1.450
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0002.170
High resolution limit [Å]2.0702.070
Number of reflections19915
<I/σ(I)>7.73.7
Completeness [%]99.53
Redundancy3.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP63005 mg/ml protein in 10 mM Hepes pH 7.5, 1 mM DTE 1:1 with well solution (100 mM Na citrate pH 6.0, 20% 2-propanol (v/v), 20% PEG-4000 (w/v)) , VAPOR DIFFUSION, HANGING DROP, temperature 300K
1VAPOR DIFFUSION, HANGING DROP63005 mg/ml protein in 10 mM Hepes pH 7.5, 1 mM DTE 1:1 with well solution (100 mM Na citrate pH 6.0, 20% 2-propanol (v/v), 20% PEG-4000 (w/v)) , VAPOR DIFFUSION, HANGING DROP, temperature 300K

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PDB entries from 2024-05-15

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