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1RKP

Crystal structure of PDE5A1-IBMX

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Wavelength(s)1.0
Spacegroup nameP 31 2 1
Unit cell lengths74.456, 74.456, 130.132
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution100.000 - 2.050
Rwork0.220
R-free0.24300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDE4D2
RMSD bond length0.006
RMSD bond angle1.200
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.0002.120
High resolution limit [Å]2.0502.050
Rmerge0.475
Number of reflections27018
<I/σ(I)>13.44.9
Completeness [%]100.0100
Redundancy7.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.50.1M tris-hcl, 17% PEG 3350, 0.2M MgSO4, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 100K

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PDB entries from 2024-05-15

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