Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1K3F

Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsOTHER
Temperature [K]293
Detector technologyDIFFRACTOMETER
Collection date1994-01-05
DetectorKARD-6
Spacegroup nameP 1 21 1
Unit cell lengths92.600, 98.800, 93.700
Unit cell angles90.00, 120.20, 90.00
Refinement procedure
Resolution6.000 - 2.500
Rwork0.186
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)trigonal form of Upase
RMSD bond length0.012
RMSD bond angle2.095
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 Overall
Low resolution limit [Å]40.000
High resolution limit [Å]2.500
Rmerge0.097
Total number of observations116050

*

Number of reflections42403
Completeness [%]84.0
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.3293drops-0.05 M Tris-HCl and 4-6% PEG 4000; equilibrium solution-0.1M Tris-mal/NaOH pH5.91-5.96, 20-25% Peg 4000 and 0.04% sodium azide, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropTris-HCl0.05 (M)
21dropprotein10-12 (mg/ml)
31dropPEG40004-6 (%)
41reservoirTris-mal/NaOH0.1 (M)
51reservoirPEG400020-25 (%)
61reservoirsodium azide0.04 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon