1IMV
2.85 A crystal structure of PEDF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 2001-04-06 |
Detector | RIGAKU RAXIS IIC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 176.174, 62.514, 45.406 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.740 - 2.850 |
R-factor | 0.188 * |
Rwork | 0.188 |
R-free | 0.22700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qlp |
RMSD bond length | 0.007 |
RMSD bond angle | 1.300 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.740 | 3.030 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmerge | 0.127 | 0.370 |
Total number of observations | 152138 * | |
Number of reflections | 11214 | |
<I/σ(I)> | 8.5 | |
Completeness [%] | 92.1 | 65.4 |
Redundancy | 12.7 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 18 * | 0.2M ammonium fluoride, 20% PEG 3350, pH 6.20, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 18 * | 0.2M ammonium fluoride, 20% PEG 3350, pH 6.20, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 18 * | 0.2M ammonium fluoride, 20% PEG 3350, pH 6.20, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 17 (mg/ml) | |
2 | 1 | reservoir | ammonium fluoride | 0.2 (M) | |
3 | 1 | reservoir | PEG3350 | 20 (%) |