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1GZG

Complex of a Mg2-dependent porphobilinogen synthase from Pseudomonas aeruginosa (mutant D139N) with 5-fluorolevulinic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMPG/DESY, HAMBURG BEAMLINE BW6
Synchrotron siteMPG/DESY, HAMBURG
BeamlineBW6
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2001-10-15
DetectorMARRESEARCH
Spacegroup nameP 4 21 2
Unit cell lengths127.131, 127.131, 86.145
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution91.300

*

- 1.660
Rwork0.175
R-free0.19800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1b4k
RMSD bond length0.020

*

RMSD bond angle1.900

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.0.32)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.720
High resolution limit [Å]1.6601.660
Rmerge0.1160.394
Total number of observations433947

*

Number of reflections82775
<I/σ(I)>114.1
Completeness [%]99.9100
Redundancy5.24.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1sparse matrix screening

*

7.5

*

PROTEIN SOLUTION: 12 MG/ML PBGS MUTANT D139N IN 50 MM K-HEPES, 10 MM MGCL2. CRYSTALLIZATION SOLUTION: 0.99 ML PROTEIN SOLUTION = 0.01 ML 2MM 5F-LA IN 50 MM K-HEPES, 10 MM MGCL2. RESERVOIR SOLUTION: 1 M NA/K-TARTRATE, 0.2M LI2SO4, 0.1 M CHES PH = 9,5. SITTING DROP: 0.003 ML CRYSTALLISATION SOLUTION + 0.003 ML RESERVOIR SOLUTION
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111potassium-HEPES50 (mM)pH7.5
21110 (mM)
311protein12 (mg/ml)
4115F-LA2 (mM)
512glycerol30 (%(v/v))

219869

PDB entries from 2024-05-15

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