1DCE
CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU RAXIS II |
Spacegroup name | P 1 |
Unit cell lengths | 57.864, 77.439, 121.775 |
Unit cell angles | 74.60, 79.91, 67.89 |
Refinement procedure
Resolution | 20.000 - 2.000 |
R-factor | 0.218 * |
Rwork | 0.215 |
R-free | 0.26340 |
Structure solution method | MIR |
RMSD bond length | 0.016 * |
RMSD bond angle | 1.800 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.063 | 0.580 |
Total number of observations | 446152 * | |
Number of reflections | 118808 * | |
<I/σ(I)> | 23.2 | 2.33 |
Completeness [%] | 93.4 | 86.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.5 * | 21 * | |
1 | Vapor diffusion, hanging drop * | 5.5 * | 21 * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5-10 (mg/ml) | |
2 | 1 | reservoir | sodium acetate | 0.1 (M) | |
3 | 1 | reservoir | magnesium acetate | 0.25 (M) | |
4 | 1 | reservoir | sodium phosphate | 10 (mM) | |
5 | 1 | reservoir | ethylene glycol | 6 (%) | |
6 | 1 | reservoir | PEG8000 | 17-21 (%) |