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PDB entries with updated X-ray structure factor data
2DFX
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BU of 2dfx by Molmil
Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor
Descriptor: Colicin-E5, Colicin-E5 immunity protein
Authors:Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H.
Deposit date:2006-03-06
Release date:2007-01-23
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DT4
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BU of 2dt4 by Molmil
Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution
Descriptor: GLYCEROL, Hypothetical protein PH0802
Authors:Lin, L, Nakano, H, Uchiyama, S, Fujimoto, S, Matsunaga, S, Nakamura, S.
Deposit date:2006-07-10
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 A resolution
Proteins, 67, 2007
2ED6
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BU of 2ed6 by Molmil
Crystal Structure of Envelope Protein VP28 from White Spot Syndrome Virus (WSSV)
Descriptor: 25kDa structural protein VP25
Authors:Hew, C.L, Sivaraman, J, Tang, X.H.
Deposit date:2007-02-14
Release date:2007-06-05
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of major envelope proteins VP26 and VP28 from white spot syndrome virus shed light on their evolutionary relationship
J.Virol., 81, 2007
2EJ1
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BU of 2ej1 by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-03-14
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
2ILL
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BU of 2ill by Molmil
Anomalous substructure of Titin-A168169
Descriptor: CHLORIDE ION, Titin
Authors:Mueller-Dieckmann, C, Weiss, M.S.
Deposit date:2006-10-03
Release date:2007-02-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2P6K
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BU of 2p6k by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, diphthine synthase
Authors:Yamamoto, H, Matsuura, Y, Ono, N, Nakamoto, T, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-18
Release date:2007-09-18
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2PNV
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BU of 2pnv by Molmil
Crystal Structure of the leucine zipper domain of small-conductance Ca2+-activated K+ (SKCa) channel from Rattus norvegicus
Descriptor: Small conductance calcium-activated potassium channel protein 2
Authors:Kim, J.Y, Kim, M.K, Kang, G.B, Park, C.S, Eom, S.H.
Deposit date:2007-04-25
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the leucine zipper domain of small-conductance Ca2+-activated K+ (SK(Ca)) channel from Rattus norvegicus.
Proteins, 70, 2008
2R60
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BU of 2r60 by Molmil
Structure of apo Sucrose Phosphate Synthase (SPS) of Halothermothrix orenii
Descriptor: Glycosyl transferase, group 1
Authors:Sivaraman, J, Chua, T.K.
Deposit date:2007-09-05
Release date:2008-06-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode.
Plant Cell, 20, 2008
2R66
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BU of 2r66 by Molmil
Complex Structure of Sucrose Phosphate Synthase (SPS)-F6P of Halothermothrix orenii
Descriptor: 6-O-phosphono-beta-D-fructofuranose, Glycosyl transferase, group 1
Authors:Sivaraman, J, Chua, T.K.
Deposit date:2007-09-05
Release date:2008-06-10
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode
Plant Cell, 20, 2008
2YXV
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BU of 2yxv by Molmil
The deletion mutant of Multicopper Oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YY2
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BU of 2yy2 by Molmil
Crystal structure of the human Phosphodiesterase 9A catalytic domain complexed with IBMX
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
Authors:Handa, N, Shirouzu, M, Terada, T, Omori, K, Kotera, J, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the human Phosphodiesterase 9A catalytic domain.
To be Published
2Z36
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BU of 2z36 by Molmil
Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cytochrome P450 type compactin 3'',4''-hydroxylase, FE (III) ION, ...
Authors:Yasutake, Y, Fujii, Y, Fujii, T, Arisawa, A, Tamura, T.
Deposit date:2007-06-02
Release date:2007-08-21
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Biochem.Biophys.Res.Commun., 361, 2007
2ZA1
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BU of 2za1 by Molmil
Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with orotidine 5'-monophosphate from P.falciparum
Descriptor: OROTIDINE-5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
Authors:Tokuoka, K, Inoue, T.
Deposit date:2007-09-26
Release date:2007-12-04
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase
J.BIOCHEM.(TOKYO), 143, 2008
2ZE6
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BU of 2ze6 by Molmil
Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with substrate analog, DMASPP
Descriptor: ADENOSINE MONOPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Isopentenyl transferase
Authors:Sakakibara, H.
Deposit date:2007-12-06
Release date:2008-02-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZE9
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BU of 2ze9 by Molmil
Crystal structure of H168A mutant of phospholipase D from Streptomyces antibioticus, as a complex with phosphatidylcholine
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase D
Authors:Suzuki, A, Toda, H, Iwasaki, Y, Yamane, T, Yamane, T.
Deposit date:2007-12-06
Release date:2007-12-25
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of phospholipase D from streptomyces antibioticus.
To be Published
2ZTS
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BU of 2zts by Molmil
Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein PH0186
Authors:Ming, H, Miyazono, K, Tanokura, M.
Deposit date:2008-10-08
Release date:2009-03-24
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 75, 2009
2ZUF
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BU of 2zuf by Molmil
Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg)
Descriptor: Arginyl-tRNA synthetase, tRNA-Arg
Authors:Konno, M, Sumida, T, Uchikawa, E, Mori, Y, Yanagisawa, T, Sekine, S, Yokoyama, S.
Deposit date:2008-10-16
Release date:2009-08-18
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
Febs J., 276, 2009
3A4C
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BU of 3a4c by Molmil
Crystal structure of cdt1 C terminal domain
Descriptor: DNA replication factor Cdt1
Authors:Cho, Y, Lee, J.H.
Deposit date:2009-07-06
Release date:2009-10-13
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:Structure of the Cdt1 C-terminal domain: Conservation of the winged helix fold in replication licensing factors
Protein Sci., 18, 2009
3BDZ
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BU of 3bdz by Molmil
The Role of Asn 242 in P450cin
Descriptor: MALONATE ION, P450cin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Meharenna, Y.T, Poulos, T.L.
Deposit date:2007-11-15
Release date:2008-02-12
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The critical role of substrate-protein hydrogen bonding in the control of regioselective hydroxylation in p450cin
J.Biol.Chem., 283, 2008
3BE0
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BU of 3be0 by Molmil
The Role of Asn 242 in P450cin
Descriptor: 1,3,3-TRIMETHYL-2-OXABICYCLO[2.2.2]OCTANE, P450cin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Meharenna, Y.T, Poulos, T.L.
Deposit date:2007-11-15
Release date:2008-02-12
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:The critical role of substrate-protein hydrogen bonding in the control of regioselective hydroxylation in p450cin
J.Biol.Chem., 283, 2008
3BXV
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BU of 3bxv by Molmil
Crystal structure studies on sulfur oxygenase reductase from Acidianus tengchongensis
Descriptor: FE (III) ION, Sulfur oxygenase/reductase
Authors:Chang, W.R, Li, M.
Deposit date:2008-01-14
Release date:2009-01-20
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure studies on sulfur oxygenase reductase from Acidianus tengchongensis
Biochem.Biophys.Res.Commun., 369, 2008
3D55
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BU of 3d55 by Molmil
Crystal structure of M. tuberculosis YefM antitoxin
Descriptor: SULFATE ION, Uncharacterized protein Rv3357/MT3465
Authors:Kumar, P, Issac, B, Dodson, E.J, Turkenberg, J.P, Mande, S.C.
Deposit date:2008-05-15
Release date:2008-12-02
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein
J.Mol.Biol., 383, 2008
3DPD
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BU of 3dpd by Molmil
Achieving multi-isoform PI3K inhibition in a series of substituted 3,4-Dihydro-2H-benzo[1,4]oxazines
Descriptor: 5,5-dimethyl-2-morpholin-4-yl-5,6-dihydro-1,3-benzothiazol-7(4H)-one, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Authors:Ceska, T.A.
Deposit date:2008-07-08
Release date:2008-08-26
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Achieving multi-isoform PI3K inhibition in a series of substituted 3,4-dihydro-2H-benzo[1,4]oxazines
Bioorg.Med.Chem.Lett., 18, 2008
3EHB
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BU of 3ehb by Molmil
A D-Pathway Mutation Decouples the Paracoccus Denitrificans Cytochrome c Oxidase by Altering the side chain orientation of a distant, conserved Glutamate
Descriptor: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase subunit 1-beta, ...
Authors:Koepke, J, Mueller, H, Peng, G.
Deposit date:2008-09-12
Release date:2008-09-30
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A d-pathway mutation decouples the paracoccusdenitrificans cytochrome C oxidase by altering the side-chain orientation of a distant conserved glutamate.
J.Mol.Biol., 384, 2008
3F4R
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BU of 3f4r by Molmil
Crystal structure of Wolbachia pipientis alpha-DsbA1
Descriptor: PENTAETHYLENE GLYCOL, Putative uncharacterized protein, TRIETHYLENE GLYCOL
Authors:Kurz, M, Heras, B, Martin, J.L.
Deposit date:2008-11-02
Release date:2009-03-24
Last modified:2025-04-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Functional Characterization of the Oxidoreductase alpha-DsbA1 from Wolbachia pipientis.
ANTIOXID.REDOX SIGNAL., 11, 2009

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