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NMR 拘束データを含む全ての PDB エントリー
7B3K
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Dynamic complex between all-D-enantiomeric peptide D3 with L723P mutant of amyloid precursor protein (APP) 672-726 fragment (amyloid beta 1-55)
分子名称: D3 all D-enantimeric peptide, Isoform L-APP677 of Amyloid-beta precursor protein
著者Bocharov, E.V, Volynsky, P.E, Okhrimenko, I.S, Urban, A.S.
登録日2020-12-01
公開日2021-01-13
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献All - d - Enantiomeric Peptide D3 Designed for Alzheimer's Disease Treatment Dynamically Interacts with Membrane-Bound Amyloid-beta Precursors.
J.Med.Chem., 64, 2021
7B4Z
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Synthetic DNA duplex dodecamer
分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*TP*G)-3')
著者Lomzov, A.A, Shernuykov, A.V, Sviridov, E.A, Shevelev, G.Y, Bagryanskaya, E.G, Pyshnyi, D.V.
登録日2020-12-03
公開日2020-12-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels.
J Phys Chem B, 120, 2016
7B71
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Single modified phosphoryl guanidine DNA duplex, Sp diastereomer
分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3')
著者Lomzov, A.A, Shernuykov, A.V, Apukhtina, V.S, Pyshnyi, D.V.
登録日2020-12-09
公開日2021-01-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Single modified phosphoryl guanidine DNA duplex, Sp diastereomer
To Be Published
7B72
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DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer
分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(RGT)P*G)-3')
著者Lomzov, A.A, Pyshnyi, D.V, Shernuykov, A.V, Apukhtina, V.S.
登録日2020-12-09
公開日2021-01-13
最終更新日2023-08-23
実験手法SOLUTION NMR
主引用文献DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer
To Be Published
7B7O
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Solution structure of A. thaliana core TatA in DHPC micelles
分子名称: Sec-independent protein translocase protein TATA, chloroplastic
著者Pettersson, P, Ye, W, Jakob, M, Tannert, F, Klosgen, R.B, Maler, L.
登録日2020-12-11
公開日2021-01-13
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structure and dynamics of plant TatA in micelles and lipid bilayers studied by solution NMR.
FEBS J, 285, 2018
7B9X
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NMR2 structure of TRIM24-BD in complex with a precursor of IACS-9571
分子名称: N-{6-[3-(4-Aminobutoxy)-5-propoxyphenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide, Transcription intermediary factor 1-alpha
著者Orts, J, Torres, F, Milbradt, A.G, Walser, R.
登録日2020-12-14
公開日2022-01-12
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献NMR Molecular Replacement Provides New Insights into Binding Modes to Bromodomains of BRD4 and TRIM24.
J.Med.Chem., 65, 2022
7BBB
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Solution structure of C-terminal RecA and RRM domains of the DEAD box helicase DbpA
分子名称: ATP-dependent RNA helicase DbpA
著者Wurm, J.P, Sprangers, R.
登録日2020-12-17
公開日2021-07-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome.
Proc.Natl.Acad.Sci.USA, 118, 2021
7BCJ
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Solution Structure of RoxP
分子名称: Radical Oxygenase of Propionibacterium acnes
著者Stoedkilde, K, Nielsen, J.T, Mulder, F.A.A, Andersen, C.B.F.
登録日2020-12-19
公開日2021-11-24
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of the Cutibacterium acnes -Specific Protein RoxP and Insights Into Its Antioxidant Activity.
Front Cell Infect Microbiol, 12, 2022
7BEV
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NMR structure of an optimized version of the first TPR domain of the human SPAG1 protein
分子名称: Sperm-associated antigen 1
著者Dermouche, S, Chagot, M.E, Quinternet, M.
登録日2020-12-29
公開日2021-03-31
最終更新日2024-01-31
実験手法SOLUTION NMR
主引用文献Optimizing the First TPR Domain of the Human SPAG1 Protein Provides Insight into the HSP70 and HSP90 Binding Properties.
Biochemistry, 60, 2021
7BFS
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deoxyxylose nucleic acid hairpin
分子名称: DNA (5'-D(*AP*GP*CP*AP*AP*TP*CP*CP*(XC)P*(XC)P*(XC)P*(XC)P*GP*GP*AP*TP*TP*GP*CP*T)-3')
著者Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
登録日2021-01-04
公開日2021-01-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
7BFX
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deoxyxylose nucleic acid hairpin
分子名称: dXyNA (5'-D(*(XA)P*(XG)P*(XC)P*(XA)P*(XA)P*(XT)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XC)P*(XG)P*(XG)P*(XA)P*(XT)P*(XT)P*(XG)P*(XC)P*T)-3')
著者Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E.
登録日2021-01-05
公開日2021-01-27
最終更新日2024-01-31
実験手法SOLUTION NMR
主引用文献Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids.
Chembiochem, 22, 2021
7BGH
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Solution structure of the chloroplast outer envelope channel OEP21
分子名称: Outer envelope pore protein 21, chloroplastic
著者Hagn, F, Haeusler, E.
登録日2021-01-07
公開日2022-01-19
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structural basis of metabolite transport by the chloroplast outer envelope channel OEP21.
Nat.Struct.Mol.Biol., 2023
7BI0
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GA repetition with i-motif clip at 5'-end
分子名称: (CH+)C(CH+)GAGA, C(CH+)CGAGA
著者Novotny, A, Novotny, J.
登録日2021-01-12
公開日2021-11-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Revealing structural peculiarities of homopurine GA repetition stuck by i-motif clip.
Nucleic Acids Res., 49, 2021
7BL0
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GA attached to an i-motif clip at 3'-end
分子名称: GA(CH+)C(5MeCH+), GAC(HCY)(5MeC)
著者Novotny, A, Novotny, J.
登録日2021-01-17
公開日2021-11-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Revealing structural peculiarities of homopurine GA repetition stuck by i-motif clip.
Nucleic Acids Res., 49, 2021
7BLM
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AG repetition attached to a compact i-motif clip at 3'-end
分子名称: AGAG(CH+)C(CH+), AGAGC(CH+)C
著者Novotny, A, Novotny, J.
登録日2021-01-18
公開日2021-11-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Revealing structural peculiarities of homopurine GA repetition stuck by i-motif clip.
Nucleic Acids Res., 49, 2021
7BMA
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AG repetition attached to an extended i-motif clip at 3'-end
分子名称: AGAG(CH+)C(5MeCH+), AGAGC(CH+)(5MeC)
著者Novotny, A, Novotny, J.
登録日2021-01-19
公開日2021-11-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Revealing structural peculiarities of homopurine GA repetition stuck by i-motif clip.
Nucleic Acids Res., 49, 2021
7BPL
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Solution NMR structure of NF1; de novo designed protein with a novel fold
分子名称: NF1
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-23
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BPM
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Solution NMR structure of NF2; de novo designed protein with a novel fold
分子名称: NF2
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-23
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BPN
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Solution NMR structure of NF7; de novo designed protein with a novel fold
分子名称: NF7
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-23
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BPP
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Solution NMR structure of NF5; de novo designed protein with a novel fold
分子名称: NF5
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-23
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BQB
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Solution NMR structure of NF6; de novo designed protein with a novel fold
分子名称: NF6
著者Kobayashi, N, Nagashima, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-24
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BQC
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Solution NMR structure of NF4; de novo designed protein with a novel fold
分子名称: NF4
著者Kobayashi, N, Nagashima, T, Minami, S, Koga, R, Chikenji, T, Koga, N.
登録日2020-03-24
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BQD
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Solution NMR structure of NF8 (knot fold); de novo designed protein with a novel fold
分子名称: NF8
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-24
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BQE
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Solution NMR structure of NF3; de novo designed protein with a novel fold
分子名称: NF3
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-24
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7BQM
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Solution NMR structure of fold-0 Chantal; de novo designed protein with an asymmetric all-alpha topology
分子名称: Chantal
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N.
登録日2020-03-25
公開日2021-04-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Design of complicated all-alpha protein structures
Nat.Struct.Mol.Biol., 2024

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