New PDB entries

A Cryo_EM structure of 5_HT1A complex with TMT
Descriptor:	5-hydroxytryptamine receptor 1A, CHOLESTEROL, Cinobufotenine, ...
Authors:	Yuan, Q, Li, S.
Deposit date:	2024-12-05
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.59 Å)
Cite:	A Cryo_EM structure of 5_HT1A complex with TMT To Be Published

9KVI

A Cryo_EM structure of 5_HT1A complex with DMT
Descriptor:	5-hydroxytryptamine receptor 1A, Bufotenin, CHOLESTEROL, ...
Authors:	Yuan, Q, Li, S.
Deposit date:	2024-12-05
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.54 Å)
Cite:	A Cryo_EM structure of 5_HT1A complex with 5-Meo-DMT To Be Published

9KWF

Cryo-EM structure of Leptospirillum ferriphilum helicase Dda
Descriptor:	Putative deoxyribonuclease
Authors:	Liu, R.H, Liu, J.D, Zhang, K, He, S.J, Feng, Q.S, Dai, J, Guo, X.R, Fu, Y, Li, Y.
Deposit date:	2024-12-05
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.52 Å)
Cite:	Cryo-EM structure of Leptospirillum ferriphilum helicase Dda To Be Published

9KZU

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Descriptor:	18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:	Iwasaki, W, Kashiwagi, K, Sakamoto, A, Nishimoto, M, Takahashi, M, Machida, K, Imataka, H, Matsumoto, A, Shichino, Y, Iwasaki, S, Imami, K, Ito, T.
Deposit date:	2024-12-11
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Structural Insights into the Role of eIF3 in Translation Mediated by the HCV IRES Proc.Natl.Acad.Sci.USA, 2025

9KZX

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Descriptor:	18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:	Iwasaki, W, Kashiwagi, K, Sakamoto, A, Nishimoto, M, Takahashi, M, Machida, K, Imataka, H, Matsumoto, A, Shichino, Y, Iwasaki, S, Imami, K, Ito, T.
Deposit date:	2024-12-11
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	Structural Insights into the Role of eIF3 in Translation Mediated by the HCV IRES Proc.Natl.Acad.Sci.USA, 2025

9LGG

Crystal structure of the human MuSK(Ig3_Fz)/L1 peptide complex
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Muscle, ...
Authors:	Matoba, K, Mizutani, F, Arimori, T, Takagi, J.
Deposit date:	2025-01-10
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.69 Å)
Cite:	Muscle-specific tyrosine kinase activation by a peptide-based dimerizer is orientation dependent Structure

9LHO

CryoEM structure of H7 hemagglutinin in complex with a human neutralizing antibody 6Y13
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, scFv of 6Y13 chimera
Authors:	Wang, M, Yuan, B, Peng, Q, Gao, G.F, Shi, Y.
Deposit date:	2025-01-13
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.1 Å)
Cite:	Structural basis for a potent human neutralizing antibody targeting a conserved epitope on the H7 hemagglutinin head. Proc.Natl.Acad.Sci.USA, 122, 2025

9LJG

transport C
Descriptor:	1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, CHOLESTEROL HEMISUCCINATE, Organic solute transporter subunit alpha, ...
Authors:	Wang, K, Jiang, D.H.
Deposit date:	2025-01-15
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.64 Å)
Cite:	transport AC To Be Published

9LJH

transport AD
Descriptor:	1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 17-oxoandrost-5-en-3beta-yl hydrogen sulfate, CHOLESTEROL HEMISUCCINATE, ...
Authors:	Wang, K, Jiang, D.H.
Deposit date:	2025-01-15
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.73 Å)
Cite:	transport AD To Be Published

9LOL

Cryo-EM structure of human MON1A-CCZ1-RAB7A
Descriptor:	Ras-related protein Rab-7a, Vacuolar fusion protein CCZ1 homolog B, Vacuolar fusion protein MON1 homolog A
Authors:	Li, X, Li, D, Tang, D, Wang, J, Qi, S.
Deposit date:	2025-01-23
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.85 Å)
Cite:	Cryo-EM structure of the human MON1A-CCZ1-RAB7A complex provides insights into nucleotide exchange mechanism. Life Metab, 4, 2025

9LPE

ATPDF2 HDZIP domain complexed with DNA
Descriptor:	DNA (5'-D(CPTPAPAPAPTPGPCPAPGPTPGPCPAPTPTPTPA)-3'), DNA (5'-D(GPTPAPAPAPTPGPCPAPCPTPGPCPAPTPTPTPA)-3'), Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Authors:	Chen, W, Huang, H.D.
Deposit date:	2025-01-24
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (3.11 Å)
Cite:	Molecular insights into DNA recognition by HD-Zip transcription factors. Plant Physiol., 198, 2025

9M2E

Crystal Structure of Nur77 LBD in complex with DBIC compound
Descriptor:	Nuclear receptor subfamily 4immunitygroup A member 1, dodecyl 1H-benzimidazole-5-carboxylate
Authors:	Hong, W.B, Lin, T.W, Chen, X.Q, Wu, Q.
Deposit date:	2025-02-27
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.575 Å)
Cite:	Crystal Structure of Nur77 LBD in complex with DBIC compound To Be Published

9M67

the flagellar filament cap FliD in complex with FliC
Descriptor:	Flagellin,Flagellar hook-associated protein 2
Authors:	Xing, Q, Cheng, X.Q, Jiang, W.X.
Deposit date:	2025-03-07
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	Structural insights into the initiation of bacterial flagellar filament elongation To Be Published

9M68

the flagellar filament cap FliD in complex with FlgL
Descriptor:	Flagellar hook-associated protein 2, Flagellar hook-associated protein 3
Authors:	Xing, Q, Cheng, X.Q, Jiang, W.X.
Deposit date:	2025-03-07
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	Structural insights into the initiation of bacterial flagellar filament elongation To Be Published

9M6I

structure of the FliD cap
Descriptor:	Flagellar hook-associated protein 2
Authors:	Xing, Q, Cheng, X.Q, Jiang, W.X.
Deposit date:	2025-03-07
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (3.06 Å)
Cite:	Structural insights into the initiation of bacterial flagellar filament elongation To Be Published

9MAP

Crystal structure of GAGWLP and PD-L1
Descriptor:	CALCIUM ION, CHLORIDE ION, G-AGWLP, ...
Authors:	Yang, P, Chen, M.R, Xiao, Y.B.
Deposit date:	2025-03-14
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Crystal structure of PD-L1 and G-AGWLP To Be Published

9MCX

CRYSTAL STRUCTURE OF HUMAN IGG1 FC FRAGMENT-FC-GAMMA RECEPTOR IIA COMPLEX H131 VARIANT
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain Fc fragment, ...
Authors:	Tolbert, W.D, Pazgier, M.
Deposit date:	2024-12-05
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	Cross-species analysis of FcgRIIa/b (CD32a/b) polymorphisms at position 131: structural and functional insights into the mechanism of IgG- mediated phagocytosis in human and macaque. Front Immunol, 2025

9MCY

CRYSTAL STRUCTURE OF HUMAN IGG1 FC FRAGMENT-FC-GAMMA RECEPTOR IIA COMPLEX R131 VARIANT
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Tolbert, W.D, Pazgier, M.
Deposit date:	2024-12-05
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.85 Å)
Cite:	Cross-species analysis of FcgRIIa/b (CD32a/b) polymorphisms at position 131: structural and functional insights into the mechanism of IgG- mediated phagocytosis in human and macaque. Front Immunol, 2025

9MUB

Human IMPDH2 mutant - S160del, treated with GTP, ATP, IMP, and NAD+; tetramer reconstruction
Descriptor:	INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:	O'Neill, A.G, Kollman, J.M.
Deposit date:	2025-01-13
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.5 Å)
Cite:	Overexpression of pathogenic human IMPDH2 variant in Xenopus tropicalis disrupts somitogenesis To Be Published

9MUC

Human IMPDH2 mutant - S160del, treated with GTP, ATP, IMP, and NAD+; interfacial octamer reconstruction
Descriptor:	INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:	O'Neill, A.G, Kollman, J.M.
Deposit date:	2025-01-13
Release date:	2025-12-03
Method:	ELECTRON MICROSCOPY (2.1 Å)
Cite:	Overexpression of pathogenic human IMPDH2 variant in Xenopus tropicalis disrupts somitogenesis To Be Published

9MYU

Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 7-(3-aminomethyl)phenyl-6-fluoro-4-methylquinoin-2-amine
Descriptor:	(7P)-7-[3-(aminomethyl)phenyl]-6-fluoro-4-methylquinolin-2-amine, 5,6,7,8-TETRAHYDROBIOPTERIN, GLYCEROL, ...
Authors:	Li, H, Poulos, T.L.
Deposit date:	2025-01-22
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.15 Å)
Cite:	Design and synthesis of 7-aryl-6-fluoro-2-aminoquinolines as potent and highly selective human neuronal nitric oxide synthase inhibitors To Be Published

9MYV

Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound with 2-(2-amino-6-fluoro-4-methylquinolin-7-yl)-5-(aminomethyl)phenol
Descriptor:	(2M)-2-(2-amino-6-fluoro-4-methylquinolin-7-yl)-5-(aminomethyl)phenol, 5,6,7,8-TETRAHYDROBIOPTERIN, GLYCEROL, ...
Authors:	Li, H, Poulos, T.L.
Deposit date:	2025-01-22
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.149 Å)
Cite:	Design and synthesis of 7-aryl-6-fluoro-2-aminoquinolines as potent and highly selective human neuronal nitric oxide synthase inhibitors To Be Published

9MYW

Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain bound 2-(2-amino-6-fluoro-4-methylquinolin-7-yl)-5-(2-aminoethyl)phenol
Descriptor:	(2M)-5-(2-aminoethyl)-2-(2-amino-6-fluoro-4-methylquinolin-7-yl)phenol, 5,6,7,8-TETRAHYDROBIOPTERIN, GLYCEROL, ...
Authors:	Li, H, Poulos, T.L.
Deposit date:	2025-01-22
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (2.305 Å)
Cite:	Design and synthesis of 7-aryl-6-fluoro-2-aminoquinolines as potent and highly selective human neuronal nitric oxide synthase inhibitors To Be Published

9MYX

Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 7-(3-aminomethyl)phenyl-6-fluoro-4-methylquinoin-2-amine
Descriptor:	(7P)-7-[3-(aminomethyl)phenyl]-6-fluoro-4-methylquinolin-2-amine, 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, ...
Authors:	Li, H, Poulos, T.L.
Deposit date:	2025-01-22
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (1.821 Å)
Cite:	Design and synthesis of 7-aryl-6-fluoro-2-aminoquinolines as potent and highly selective human neuronal nitric oxide synthase inhibitors To Be Published

9MYY

Structure of rat neuronal nitric oxide synthase R349A mutant heme domain bound with 2-(2-amino-6-fluoro-4-methylquinolin-7-yl)-5-(aminomethyl)phenol
Descriptor:	(2M)-2-(2-amino-6-fluoro-4-methylquinolin-7-yl)-5-(aminomethyl)phenol, 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, ...
Authors:	Li, H, Poulos, T.L.
Deposit date:	2025-01-22
Release date:	2025-12-03
Method:	X-RAY DIFFRACTION (1.83 Å)
Cite:	Design and synthesis of 7-aryl-6-fluoro-2-aminoquinolines as potent and highly selective human neuronal nitric oxide synthase inhibitors To Be Published

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