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Legacy flatfile-incompatible PDB entries
8P1Z
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Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
Descriptor: Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D.
Deposit date:2023-05-13
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
To Be Published
8P20
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TarM(Se)_G117R-UDP-4RboP-glucose
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, GLYCEROL, ...
Authors:Guo, Y, Stehle, T.
Deposit date:2023-05-14
Release date:2023-12-06
Method:X-RAY DIFFRACTION (2.848 Å)
Cite:Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition.
Sci Adv, 9, 2023
8P2F
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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 2-[(3~{R},4~{S},5~{S},8~{S},9~{S},10~{S},11~{R},13~{S},14~{S},16~{S})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid, ...
Authors:Gonzalez-Lopez, A, Selmer, M.
Deposit date:2023-05-16
Release date:2024-05-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2G
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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 2-[(3~{R},4~{S},5~{S},8~{S},9~{S},10~{S},11~{R},13~{S},14~{S},16~{S})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid, ...
Authors:Gonzalez-Lopez, A, Selmer, M.
Deposit date:2023-05-16
Release date:2024-05-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.02 Å)
Cite:Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2H
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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Gonzalez-Lopez, A, Selmer, M.
Deposit date:2023-05-16
Release date:2024-05-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2K
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Ternary complex of translating ribosome, NAC and METAP1
Descriptor: 18s rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Jia, M, Jaskolowski, M, Scaiola, A, Jomaa, A, Ban, N.
Deposit date:2023-05-16
Release date:2023-07-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:NAC controls cotranslational N-terminal methionine excision in eukaryotes.
Science, 380, 2023
8P4G
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Crystal structure of a multicopper oxidase 3F3 variant from Pyrobaculum aerophilum
Descriptor: CHLORIDE ION, COPPER (II) ION, Multicopper oxidase
Authors:Borges, P.T, Brissos, V, Frazao, C, Martins, L.O.
Deposit date:2023-05-21
Release date:2024-02-21
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Flexible active-site loops fine-tune substrate specificity of hyperthermophilic metallo-oxidases.
J.Biol.Inorg.Chem., 29, 2024
8P4T
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The spike complex of the Lujo Virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein, ...
Authors:Eilon-Ashkenazy, M, Diskin, R.
Deposit date:2023-05-23
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:The spike complex of the Lujo Virus
To Be Published
8P5D
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Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging
Descriptor: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S10, ...
Authors:Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B.
Deposit date:2023-05-23
Release date:2023-06-21
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state.
Nat Microbiol, 8, 2023
8P5E
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S. cerevisiae nexus-sCMGE after DNA replication initiation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ...
Authors:Henrikus, S.S, Willhoft, O.
Deposit date:2023-05-24
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Unwinding of a eukaryotic origin of replication visualized by cryo-EM.
Nat.Struct.Mol.Biol., 2024
8P5F
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Human wild-type GAPDH,orthorhombic form
Descriptor: ACETATE ION, Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Samygina, V.R, Muronetz, V.I, Schmalhausen, E.V.
Deposit date:2023-05-24
Release date:2023-07-05
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:S-nitrosylation and S-glutathionylation of GAPDH: Similarities, differences, and relationships.
Biochim Biophys Acta Gen Subj, 1867, 2023
8P5M
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SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab)
Descriptor: Mab-23 (Heavy chain variable domain), Mab-23 (Light chain variable domain), Spike protein S1
Authors:Das, H, Hallberg, B.M.
Deposit date:2023-05-24
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab domains)
To Be Published
8P5P
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BU of 8p5p by Molmil
Structure of TECPR1 N-terminal DysF domain
Descriptor: GLYCEROL, Tectonin beta-propeller repeat-containing protein 1
Authors:Boyle, K.B, Elliott, P.R, Randow, F.
Deposit date:2023-05-24
Release date:2023-07-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:TECPR1 conjugates LC3 to damaged endomembranes upon detection of sphingomyelin exposure.
Embo J., 42, 2023
8P60
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BU of 8p60 by Molmil
Spraguea lophii ribosome dimer
Descriptor: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S1, ...
Authors:Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B.
Deposit date:2023-05-24
Release date:2023-06-21
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (14.3 Å)
Cite:CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state.
Nat Microbiol, 8, 2023
8P63
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S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ...
Authors:Henrikus, S.S, Willhoft, O.
Deposit date:2023-05-25
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Unwinding of a eukaryotic origin of replication visualized by cryo-EM.
Nat.Struct.Mol.Biol., 2024
8P6J
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BU of 8p6j by Molmil
Structure of the hypervariable region of Streptococcus pyogenes M3 protein in complex with a collagen peptide
Descriptor: Antiphagocytic M protein, type 3, collagen II-27 Toolkit peptide (JDM238)
Authors:Wojnowska, M, Schwarz-Linek, U.
Deposit date:2023-05-26
Release date:2023-06-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.324 Å)
Cite:Structural basis for collagen recognition by the Streptococcus pyogenes M3 protein
To Be Published
8P6K
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Structure of the hypervariable region of Streptococcus pyogenes M3 protein
Descriptor: Antiphagocytic M protein, type 3
Authors:Wojnowska, M, Schwarz-Linek, U.
Deposit date:2023-05-26
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.918 Å)
Cite:Structural basis for collagen recognition by the Streptococcus pyogenes M3 protein
To Be Published
8P8E
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BU of 8p8e by Molmil
Crystal structure of endolysin gp46 from Pseudomonas aeruginosa bacteriophage vB_PaeM_KTN6
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, Glycoside hydrolase family protein
Authors:van Raaij, M.J, Sanz-Gaitero, M.
Deposit date:2023-06-01
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.391 Å)
Cite:Structural and Biochemical Characterization of a New Phage-Encoded Muramidase, KTN6 Gp46
PHAGE, 2024
8P8K
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Acyl-ACP thioesterase from Lemna paucicostata in complex with a thiazolopyridine
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-[2,6-bis(fluoranyl)phenyl]-6-chloranyl-[1,3]thiazolo[4,5-b]pyridine, Acyl-ACP thioesterase
Authors:Freigang, J.
Deposit date:2023-06-01
Release date:2023-09-20
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Study in Scaffold Hopping: Discovery and Optimization of Thiazolopyridines as Potent Herbicides That Inhibit Acyl-ACP Thioesterase.
J.Agric.Food Chem., 71, 2023
8P8M
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Yeast 60S ribosomal subunit, RPL39 deletion
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Rabl, J, Banerjee, A, Boehringer, D, Zavolan, M.
Deposit date:2023-06-01
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Yeast 60S ribosomal subunit, RPL39 deletion
To Be Published
8P8N
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Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Rabl, J, Banerjee, A, Boehringer, D, Zavolan, M.
Deposit date:2023-06-02
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.15 Å)
Cite:Yeast 60S ribosomal subunit, RPL39 deletion
To Be Published
8P8U
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Yeast 60S ribosomal subunit
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Rabl, J, Banerjee, A, Boehringer, D, Zavolan, M.
Deposit date:2023-06-02
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:Yeast 60S ribosomal subunit
To Be Published
8P94
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Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Liu, T, Moores, C.A.
Deposit date:2023-06-05
Release date:2024-01-03
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cortactin stabilizes actin branches by bridging activated Arp2/3 to its nucleated actin filament.
Nat.Struct.Mol.Biol., 31, 2024
8PAB
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Structures of the ectodomains of Atypical porcine pestivirus solved by long wavelength sulphur SAD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein
Authors:Aitkenhead, H, Stuart, D.I, El Omari, K.
Deposit date:2023-06-07
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure, 32, 2024
8PAE
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Structure of the ectodomain of Atypical Porcine Pestivirus E2 at 1.2A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein
Authors:Aitkenhead, H, Stuart, D.I, EL Omari, K.
Deposit date:2023-06-07
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure, 32, 2024

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PDB entries from 2024-08-07

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