Legacy flatfile-incompatible PDB entries

8BA7	CryoEM structure of nucleotide-free GroEL-Rubisco. Descriptor: Chaperonin GroEL Authors: Gardner, S, Saibil, H.R. Deposit date: 2022-10-11 Release date: 2023-10-25 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis of substrate progression through the bacterial chaperonin cycle. Proc.Natl.Acad.Sci.USA, 120, 2023
8BA8	CryoEM structure of GroEL-ADP.BeF3-Rubisco. Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chaperonin GroEL, ... Authors: Gardner, S, Saibil, H.R. Deposit date: 2022-10-11 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of substrate progression through the bacterial chaperonin cycle. Proc Natl Acad Sci U S A, 120, 2023
8BA9	CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco. Descriptor: 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, ... Authors: Gardner, S, Saibil, H.R. Deposit date: 2022-10-11 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of substrate progression through the bacterial chaperonin cycle. Proc Natl Acad Sci U S A, 120, 2023
8BAC	Crystal structure of human heparanase in complex with competitive inhibitor GD05 Descriptor: (3S,4R,5R)-4,5-dihydroxypiperidine-3-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Armstrong, Z, Davies, G.J. Deposit date: 2022-10-11 Release date: 2023-03-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Synthesis of Uronic Acid 1-Azasugars as Putative Inhibitors of alpha-Iduronidase, beta-Glucuronidase and Heparanase. Chembiochem, 24, 2023
8BBZ	Crystal Structure of SilF (apo form) Descriptor: SilF, ZINC ION Authors: Lithgo, R.M, Carr, S.B, Quigley, A.M, Scott, D.J. Deposit date: 2022-10-14 Release date: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of SilF (apo form) To Be Published
8BCP	Cryo-EM structure of the proximal end of bacteriophage T5 tail : p142 tail terminator protein hexamer and pb6 tail tube protein trimer Descriptor: Tail tube protein, Tail tube terminator protein p142 Authors: Linares, R, Effantin, G, Breyton, C. Deposit date: 2022-10-17 Release date: 2023-11-01 Method: ELECTRON MICROSCOPY (3.88 Å) Cite: Cryo-EM structure of the proximal end of bacteriophage T5 tail, in its native state and after interaction with its bacterial receptor To Be Published
8BCU	Cryo-EM structure of the proximal end of bacteriophage T5 tail, after interaction with its receptor : p142 tail terminator protein hexamer and pb6 tail tube protein trimer Descriptor: Tail tube protein, Tail tube terminator protein p142 Authors: Linares, R, Effantin, G, Breyton, C. Deposit date: 2022-10-17 Release date: 2023-11-01 Method: ELECTRON MICROSCOPY (4.05 Å) Cite: Cryo-EM structure of the proximal end of bacteriophage T5 tail, in its native state and after interaction with its bacterial receptor To Be Published
8BD3	Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R)-beta,beta-caroten-3-ol, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... Authors: Fadeeva, M, Klaiman, D, Caspy, I, Nelson, N. Deposit date: 2022-10-18 Release date: 2023-08-09 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress. Cells, 12, 2023
8BD6	Cas12k-sgRNA-dsDNA-TnsC non-productive complex. Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cas12k, DNA, ... Authors: Schmitz, M, Querques, I, Oberli, S, Chanez, C, Jinek, M. Deposit date: 2022-10-18 Release date: 2022-12-28 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis for the assembly of the type V CRISPR-associated transposon complex. Cell, 185, 2022
8BD7	IFTB1 subcomplex of anterograde Intraflagellar transport trains (Chlamydomonas reinhardtii) Descriptor: Clusterin-associated protein 1, IFT54, IFT70, ... Authors: Lacey, S.E, Foster, H.E, Pigino, G. Deposit date: 2022-10-18 Release date: 2023-01-11 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains. Nat.Struct.Mol.Biol., 30, 2023
8BDA	IFTA complex in anterograde intraflagellar transport trains (Chlamydomonas reinhardtii) Descriptor: Intraflagellar transport particle protein 140, Intraflagellar transport protein 121, Intraflagellar transport protein 122 homolog, ... Authors: Lacey, S.E, Foster, H.E, Pigino, G. Deposit date: 2022-10-18 Release date: 2023-01-11 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (20.7 Å) Cite: The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains. Nat.Struct.Mol.Biol., 30, 2023
8BE3	Crystal structure of KRasG12V-Nanobody84 Descriptor: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, MAGNESIUM ION, ... Authors: Fischer, B, Wohlkonig, A, Steyaert, J. Deposit date: 2022-10-21 Release date: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: ChILL & DisCO to discover Nanobodies that modulate protein-protein interactions and tune the SOS-Ras nucleotide exchange rate To Be Published
8BE4	Crystal structure of SOS1-KRasG12V-Nanobody14 Descriptor: Isoform 2B of GTPase KRas, Nanobody14, Son of sevenless homolog 1 Authors: Fischer, B, Wohlkonig, A, Steyaert, J. Deposit date: 2022-10-21 Release date: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: ChILL & DisCO to discover Nanobodies that modulate protein-protein interactions and tune the SOS-Ras nucleotide exchange rate To Be Published
8BE5	Crystal structure of SOS1-KRasG12V-Nanobody22-Nanobody75 Descriptor: Isoform 2B of GTPase KRas, Nanobody22, Nanobody75, ... Authors: Fischer, B, Wohlkonig, A, Steyaert, J. Deposit date: 2022-10-21 Release date: 2023-11-01 Method: X-RAY DIFFRACTION (3.13 Å) Cite: ChILL & DisCO to discover Nanobodies that modulate protein-protein interactions and tune the SOS-Ras nucleotide exchange rate To Be Published
8BF7	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-24 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.33 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BFL	Jumbo Phage phi-kp24 empty capsid hexamers Descriptor: Major head protein Authors: Ouyang, R. Deposit date: 2022-10-26 Release date: 2022-12-07 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers. Nat Commun, 13, 2022
8BFP	Jumbo Phage phi-kp24 empty capsid pentamer hexamers Descriptor: Major head protein Authors: Ouyang, R. Deposit date: 2022-10-26 Release date: 2022-12-07 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers. Nat Commun, 13, 2022
8BGB	Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans Descriptor: CITRATE ANION, Histidine kinase, SODIUM ION Authors: Becker, S. Deposit date: 2022-10-27 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans To Be Published
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGH	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGI	GABA-A receptor a5 homomer - a5V1 - Flumazenil Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Gamma-aminobutyric acid receptor subunit alpha-5, Pregnanolone, ... Authors: Miller, P.S, Malinauskas, T.M, Omari, K.E, Aricescu, A.R. Deposit date: 2022-10-27 Release date: 2023-11-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.56 Å) Cite: The molecular basis of drug selectivity for alpha 5 subunit-containing GABA A receptors. Nat.Struct.Mol.Biol., 30, 2023
8BH4	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-29 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHF	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S11, ... Authors: Absmeier, E, Chandrasekaran, V, O'Reilly, F.J, Stowell, J.A.W, Rappsilber, J, Passmore, L.A. Deposit date: 2022-10-31 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2. Nat.Struct.Mol.Biol., 30, 2023
8BHJ	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHL	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.21 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023

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