Legacy flatfile-incompatible PDB entries

8UR0	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-25 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8URH	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-26 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (5.7 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8URI	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-26 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8URV	Solution NMR structure of pro-IL-18 Descriptor: Interleukin-18 Authors: Bonin, J.P, Aramini, J.M, Kay, L.E. Deposit date: 2023-10-26 Release date: 2024-05-29 Last modified: 2024-07-24 Method: SOLUTION NMR Cite: Structural transitions enable interleukin-18 maturation and signaling. Immunity, 57, 2024
8URX	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-27 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome Nat.Struct.Mol.Biol., 2024
8URY	Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S11, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H. Deposit date: 2023-10-27 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of RfaH-mediated transcription-translation coupling Nat.Struct.Mol.Biol., 2024
8USQ	Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway Descriptor: DNA repair/transcription protein MET18/MMS19 Authors: Vasquez, S, Drennan, C.L. Deposit date: 2023-10-29 Release date: 2023-12-27 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (12.77 Å) Cite: Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway. Commun Biol, 6, 2023
8UTF	Structure of the Measles virus Fusion protein in the post-fusion conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0 Authors: Zyla, D, Saphire, E.O. Deposit date: 2023-10-31 Release date: 2024-07-03 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: A neutralizing antibody prevents postfusion transition of measles virus fusion protein. Science, 384, 2024
8UU4	Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU5	Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU6	Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU7	Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU8	Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU9	Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... Authors: Seely, S.M, Basu, R.S, Gagnon, M.G. Deposit date: 2023-10-31 Release date: 2024-02-28 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UVR	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Killam, B.Y, Phelps, G.A, Lee, R.E, Polikanov, Y.S. Deposit date: 2023-11-03 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Development of 2nd generation aminomethyl spectinomycins that overcome native efflux in Mycobacterium abscessus. Proc.Natl.Acad.Sci.USA, 121, 2024
8UVS	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution Descriptor: (2R,4R,4aS,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)-4-({[2-(oxan-4-yl)ethyl]amino}methyl)octahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4a,7,9(10aH)-tetrol, 16S Ribosomal RNA, 23S Ribosomal RNA, ... Authors: Killam, B.Y, Phelps, G.A, Lee, R.E, Polikanov, Y.S. Deposit date: 2023-11-03 Release date: 2024-08-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Development of 2nd generation aminomethyl spectinomycins that overcome native efflux in Mycobacterium abscessus. Proc.Natl.Acad.Sci.USA, 121, 2024
8UXC	Structure of PKA phosphorylated human RyR2-R420Q in the primed state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXE	Structure of PKA phosphorylated human RyR2-R420Q in the closed state in the presence of ARM210 Descriptor: 4-[(7-methoxy-2,3-dihydro-1,4-benzothiazepin-4(5H)-yl)methyl]benzoic acid, ADENOSINE-5'-TRIPHOSPHATE, Peptidyl-prolyl cis-trans isomerase FKBP1B, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXF	Structure of PKA phosphorylated human RyR2-R420W in the primed state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXG	Structure of PKA phosphorylated human RyR2-R420W in the closed state in the presence of ARM210 Descriptor: 4-[(7-methoxy-2,3-dihydro-1,4-benzothiazepin-4(5H)-yl)methyl]benzoic acid, ADENOSINE-5'-TRIPHOSPHATE, Peptidyl-prolyl cis-trans isomerase FKBP1B, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXH	Structure of PKA phosphorylated human RyR2-R420W in the primed state in the presence of calcium Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.52 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXI	Structure of PKA phosphorylated human RyR2-R420W in the open state in the presence of calcium Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXL	Structure of PKA phosphorylated human RyR2-R420W in the primed state in the presence of calcium and calmodulin Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Calmodulin-1, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8UXM	Structure of PKA phosphorylated human RyR2-R420W in the open state in the presence of calcium and calmodulin Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Calmodulin-1, ... Authors: Miotto, M.C, Marks, A.R. Deposit date: 2023-11-09 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.56 Å) Cite: Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders To Be Published
8V3D	AgamOR28 structure bound to 2,4,5-trimethylthiazole Descriptor: 2,4,5-trimethyl-1,3-thiazole, OR28, Odorant receptor Orco Authors: Zhao, J, del Marmol, J. Deposit date: 2023-11-27 Release date: 2024-06-19 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural basis of odor sensing by insect heteromeric odorant receptors. Science, 384, 2024

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